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54-1983-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19663901 [Map]; Strand: w
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon4 (3UTR)
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon4 (3UTR)
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: intron4 (3UTR)
    Flanking Genome Sequence: 54-1983-1 - 5-prime edge 
    CTTAGAATGG TACTTCATTC AGCTTATCGT GTTAGGTACG TGGGTTTAAG 
    GCAAATGAAT GTGAACATTG CTCTAGAATG ATATATGAAC TAGCCCCTTA 
    AGGAATATTT CTTGTAAATC TTAAAGTTCT GAGATGAATT ATTGTTCAAA 
    ATACAAGTGG GAGTACATAT ACNGTTTTGT TATCAAGAAT GCAGCTGGTA 
    AATTTAAACA AAGTAAAAGA ATTGAGTATA TAGATAATTC TTGCATCCCA 
    GTGTCTGTTG GTTCTTCTAT TCGACAGAGA AAGCGAGAGA ANAAGGAGGC 
    TCATGTGTTT AGTTCTAGGC TAAGCCTTTC CTCATNTTCT CNAAAAAANC 
    CNGGCCGNGN NNCNNAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19663785 [Map]; Strand: w
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon4 (3UTR)
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon4 (3UTR)
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 54-1983-1 - 3-prime edge 
    ATTCTAAGGA AGAAAAGACA AAGAATNTTC ATGCTCTAAT CCCATCATGA 
    TTCACGAGTA GTCCCTACTC TGTTCTTTCC AGCCATCCAA GCTGAAAGTA 
    AGAGGCCANN NGGGGCCAGA ATACCTCTGA GCNCAGCACA TATAACTATA 
    TAAGCGCCCC TCAATAATTA CCATTCGACA TACCTTCCAG GCATACATAG 
    CAAAGAAGGC AACCGTGTCA GCAGACCAGA CAAGAGCAAA TGATTTCCAA 
    AAGAAGGGAA TAGCAACATT GAGCAAGGGG ACGATGAGAA AGAGGNAGGN 
    AAGAGCCTCT TTCTCTTTAC TTGGACAGNC TNGTGCCCNA ANAGAANGAA 
    TAGCNGGAAA GAAAGTNAAG GATTANGGGC AAAANTGCNN CCNTNGNATA 
    ANNNNNGGNN GAAGAANGGG GNANAANGNN ACATNNNGAN CNTNNNNNTG 
    GNNGGNNNGG CCC

AT2G48070.1

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.2

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.3

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link
InterPro Scan - TAIR