1. Home
  2. Mutant Lines
  3. 54-1985-1

54-1985-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2390872 [Map]; Strand: c
      • AT3G07490.1 - [+] show detail - ARF-GAP domain 11
        Distance: -317; Region: promoter
    Flanking Genome Sequence: 54-1985-1 - 5-prime edge 
    NCTAGAANAC AGNNATGNNA GNANATNNTG CCACCGGACN GGCAGACCNN 
    ACNTTGCGGA TNNGAGATGA CCAGGCGAAG ANNTANCAGA TANTCAATNC 
    ANGGTGAANA CGAAGNATNC TTGAATAGCA AAGCGNTCAT GGGCCTGCTG 
    AGCATAGCGG TGCGGTTATA NTTTNGTNCA GGAACTTATT TATTTATTTT 
    ATCTACATAA GATGTAACGT TATTCTAAGT GGATNTGNTC TATACACTTC 
    TTTNNTTGGN GATGTGANNA TGGCGGANGT TGNGAAGATN GANNAGACAA 
    CTTGAACGGT GCTNGAGGNG AGGGTNGGGA GAGATAGANT TNTAATCTAG 
    TTCAANGTNT TAAGCACCTT CNGAACAGAT GGNTANNAGG GTNNTGNGGG 
    NTNAAANANN NNGNGTNNGG GGNNAGNCGG NGNGAGGGCG GGGGGGTGGA 
    CGGAGGNTNT GNTGNGTAGT TTGGAGGTAT ATGCGNNGAN NTNNAGGNTN 
    NANTTNTNNN GCNNNNGTCT NGNANTGNAN AAANGGATCA ANGCCNAGAG 
    TNGGGNTAAT TGNGGGNNGN GNAATTGTNG GGGGTTGGNG NTGNGANGTT 
    AGNCAACGGC GGNGGGNGGA GNCNGGAGGA GCNNGTCCNT GGGNNTGTNN 
    GGNGGGGCNG TGTTCGGGAG NAGTGGAAGG CNANNGGCGA ACGNGAACGG 
    TGGNGNGTNT GGGNNGNTNG NGANNAGGAG GGGGAGNGNG TNNNNAGGNG 
    GTTATNANAG GNAAAAAANA AAGGNAANAN AAA

AT3G07490.1

Model type
Protein coding
Short Description
ARF-GAP domain 11
Curator Summary
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational Description
ARF-GAP domain 11 (AGD11); FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G43290.1); Has 25143 Blast hits to 16842 proteins in 1503 species: Archae - 3; Bacteria - 170; Metazoa - 10890; Fungi - 4135; Plants - 6085; Viruses - 0; Other Eukaryotes - 3860 (source: NCBI BLink).
Link
InterPro Scan - TAIR