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54-1988-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2390856 [Map]; Strand: c
      • AT3G07490.1 - [+] show detail - ARF-GAP domain 11
        Distance: -333; Region: promoter
    Flanking Genome Sequence: 54-1988-1 - 5-prime edge 
    CACGGAATCT ACACATTATC TCGTATTTTG TCATCTTCAA AACAGTTTTC 
    CGTTAGGATA GTTATTTCAG GTTAAATCTT TTGAGACTCA ATTTATGGTA 
    TAGACAAATA TAATTCAATT CAAATGCTTA TCGTCTGTTT GTATATGTTT 
    GGTTAATTTT CTACAAAACT TATTTATTTA TTTTATCTAC ATAAGATGTA 
    ACTTATTCTA AGTGGATTTG TTCTATACAC TTCTTTTTTT GTCGATTTGA 
    ACATGGCGAT GTTTCGAAAA TAGAAGAGAC AACTTGAACA ATAATAAAAT 
    TAAAATAAAA GAGATAGCCT TTAAAATAGT CAAGGTCTTA ATCACTTCTT 
    AACAGATTGA TAGTCTGTTA ACAGGTTTAA ATTATGTTGT ATTGCACATC 
    CTTATAAGAC TGAGAGTAAT GATTATTGTG TTAAGTGCAC CACAAGCAGA 
    AATTGATTTT GATATCAACG TTTTCAGGTA GATAGAGATG AGCATCCATT 
    TTTCAGTTTG CTTTGGTTTC GGATTTTGAA AAACGAGTNA GAATTANAAA 
    ACTATTCGCA ACATTTAAAG ATGCCTAAGC TGNGTTTANA AACTACTGGN 
    NNGAAAATAN TATCTAAACA GNNTACNCAA TATGGTTTTG NTACNGGATC 
    AAACCCTGNN CAGANTNGGN NCTNCAAANA NAANNNNNGN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2390922 [Map]; Strand: c
      • AT3G07490.1 - [+] show detail - ARF-GAP domain 11
        Distance: -267; Region: promoter
    Flanking Genome Sequence: 54-1988-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATGTGGA 
    ATTCCGTGTG TATCTCTATT GATAGACTTT AGTTTTTGTG TATTCTTGAA 
    GGACATAAAC CTATTTTAAG ACCAGTTCAA CAGAAAACTG GTGCAGACCA 
    CGATCACAGT TGTAATGAGT TTTCTAAAAT GGTAACCACN CCTNNCCCTT 
    TACCAAGCAG TCCTTCTTCT TGTCTCCTGC CCTAATTCTC TTCTTCTCTA 
    TAAACCCATA TTCTAGTTTT GTTCTCATTC ATTCTCTGTT CAAAGCTCAT 
    AAATAATAAA CTCCAATTAN GAATGGATCA AGCGGAGCTT GCCAGGATCT 
    TCCAAATGTN CGNCNGGAAC GGTGATGGCA AAATCACAAN CCAAGAGCTG 
    ACNGATTCAT TGGAGAGGCT ATGAATCTAC ATTCCNAACA NCAGACTTGG 
    TGCNAANGNT TNNGAAGNAN GNTCTCAANC NAAANGGNAA NNGGGGGNTG 
    NGCTTTTTTN TTTGGCAAAA NCCNTTCNNN ATCNNTTGAA AGGGNTNNCC 
    CCNAAAAATC NTTCNNANGA AAAAANACCC NNTNGANNGT GGGNCCCCNC 
    CCCCCNCCCC AAAAANGNGN TTTTTTTTTT TCAAGANNNN NTCNTGGGGG 
    GGGGGNACCC CCCCCCCTNN NNNANNGGGG NNAAACCNCT NNGAAGAAAN 
    NNNNCCCNNN NTCNNNNA

AT3G07490.1

Model type
Protein coding
Short Description
ARF-GAP domain 11
Curator Summary
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational Description
ARF-GAP domain 11 (AGD11); FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G43290.1); Has 25143 Blast hits to 16842 proteins in 1503 species: Archae - 3; Bacteria - 170; Metazoa - 10890; Fungi - 4135; Plants - 6085; Viruses - 0; Other Eukaryotes - 3860 (source: NCBI BLink).
Link
InterPro Scan - TAIR