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54-1994-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 242552 [Map]; Strand: w
      • AT4G00560.4 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -201; Region: promoter
      • AT4G00560.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -173; Region: promoter
      • AT4G00560.2 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -173; Region: promoter
      • AT4G00560.3 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -173; Region: promoter
      • AT4G00570.1 - [+] show detail - NAD-dependent malic enzyme 2
        Distance: 0; Region: exon19 (3UTR)
    Flanking Genome Sequence: 54-1994-1 - 5-prime edge
    TTGGTATCAG AACAAAAATG GTAAAGCAGG AAAATGTAGA AGAAAGATAT 
    CATTATTGGC TTATTATTGC CAAAACAGTA TATAAAGTTG TAATCATTAT
    CATCAGAAAT AATCGTAAGA AGTTGGAAAA ATGTCCAAAA AAAAAAAGGG
    CCAGGNCCGG GNGNCCCNAA ACCNACCCCN GTNTTNGTNT TNANCCCCTT
    TTTTGGGCTT NGTTTTTTTN AAACCNTNNC CNNTTTGNAA AAAAAAAAAA
    NGGNGGTNCC CAANNAAANN ANNANCCNAA AATTTTTGGN TTTNGGNNTT
    NNTNNNAACC CGGAAAANNN TTNTNNNNNG NGGNGGNNTT TTNNNNGGNA
    NCAANGGGGN NGAAACCGGG AACCCNNNNG NGGGGGGAAN GGAAATCNCC
    GGNNCCCCCC GGGGGGGGGC TTNAAAAAAN CCANTNAANT CCCTTTTTNA
    AANTNCCNTN NCCCNGGTNC GNANCNAAAN NNNNCNCNNN GTCCCTGGNT
    CNANCCCTNA ANNNNGGGGN GNAAANNTTG GGNNCNAANN TNCCNANGNC
    NTTTGGAANG GNNNTNNGCC CCCGANNTTG GNAAANNNGT NNCCCCAATT
    TAAGNNGTTT NGGNCGGGNG GCGGCANTTT TTCNAAAACC NATTGGCTNN
    AAAAACCGGT TTAAATNTCC TAAAATAAAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 242488 [Map]; Strand: w
      • AT4G00560.4 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -137; Region: promoter
      • AT4G00560.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -109; Region: promoter
      • AT4G00560.2 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -109; Region: promoter
      • AT4G00560.3 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -109; Region: promoter
    Flanking Genome Sequence: 54-1994-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGGATACCAA AAGGTTTAAA TGGTTTCGAG ATTCAACCAA CTTTGAAGAG
    TTGTTAATGC AGTTGCAGAA GCATGTTAAC CGAAAATCAT TCCAAACCGG
    AGAATATCAA CTCGAACCAG AATACCAAAC CGGAAATTCC AACAGTGATC
    GTGCTATGTT TAAGTTAAAA TTTAAATTAA GCAAACACCG GAGAGTGATT
    GGATCGGGGA ATTTGGGAAA AGTATGGAGA AGAAGACGAA AGTGCTAATT
    GTGGGAGGTA CTGGATACTT GGGTCAGCAT CTTCTTCAAG CT

AT4G00560.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: dTDP-4-dehydrorhamnose reductase activity, binding, catalytic activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, extracellular polysaccharide biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); Has 7761 Blast hits to 7761 proteins in 1842 species: Archae - 350; Bacteria - 5037; Metazoa - 116; Fungi - 124; Plants - 45; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00560.2

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: dTDP-4-dehydrorhamnose reductase activity, binding, catalytic activity; INVOLVED IN: extracellular polysaccharide biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00560.3

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: dTDP-4-dehydrorhamnose reductase activity, binding, catalytic activity; INVOLVED IN: extracellular polysaccharide biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00560.4

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: dTDP-4-dehydrorhamnose reductase activity, binding, catalytic activity; INVOLVED IN: extracellular polysaccharide biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913).
Link
InterPro Scan - TAIR

AT4G00570.1

Model type
Protein coding
Short Description
NAD-dependent malic enzyme 2
Curator Summary
Encodes an NAD-dependent malic enzyme (NAD-ME) that does not act on oxaloacetate, indicating that it belongs to EC 1.1.1.39. It is a member of the beta family of NAD-MEs in plants. It appears to function as a homodimer or as a heterodimer with the alpha-type NAD-ME2 (At2g13560). NAD-ME2 transcript and protein levels are higher during the night than during the day.
Computational Description
NAD-dependent malic enzyme 2 (NAD-ME2); FUNCTIONS IN: in 7 functions; INVOLVED IN: malate metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malic enzyme, NAD-binding (InterPro:IPR012302), Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD-dependent malic enzyme 1 (TAIR:AT2G13560.1); Has 9343 Blast hits to 9326 proteins in 2439 species: Archae - 143; Bacteria - 6323; Metazoa - 607; Fungi - 223; Plants - 463; Viruses - 0; Other Eukaryotes - 1584 (source: NCBI BLink).
Link
InterPro Scan - TAIR