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Mutant Lines
54-2007-1

54-2007-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 11576264 [Map]; Strand: c
- AT1G32170.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 30
  Distance: 0; Region: exon3 (CDS)

NATTGCCGTA TANATACGTC TGAAACCTCC ACGGCNTTCC TTGGNTGTTC 
CCTAGAAACT CTATGTCTAA CTCGGCGTGT GTTTTCTCGA ACACAGTCTN 
CGTTNGATGT CNACCACANA ATCNANATAT AAGGTACAGC TNTAGTCACC 
ATGATAACAT ANAATGGGAC ATTTAANGAT TGGGTGCTCT TTTNCTNGGG 
AAACATAGAA CTATNTTCTT GGGANAANTA ATGACTNTNN TCTANGCAGN 
CNAACAGGAA AAAATGTGAC ATGGGTTCTT CGACGAAAAG NGTGGTATTG 
ACGATTTTCT CGGCCACAAA AAAAAANANA NTGNAANTNA CANCAAATTA 
NCTGGGACAN GATCTTTTNN TATAAAAGAT AATGAAAACT ATCNGCAAAT 
AATTAANTAN CTAATAGAAA ACNGAAATCT TTCATGCATA TGGNNNAANG 
ANGNNAANGG GGCTTCACTT TTNANANGAG TNNNNNCTNA ATAANGAATG 
AATGAATATT CGGNNCNGGN CNCNACTTAA TGGGGCGTAC GACCCCNNCC 
GTNTATTTTC AGNNNAAGAG CCNATCGGGG NCNTGNACAN ACGGGNNNNT 
NAAAANANNG NGCATGTCAT TTCGTATAAN CTCCAAGCTA CCAGC

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 11576380 [Map]; Strand: c
  - AT1G32170.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 30
    Distance: 0; Region: exon3 (CDS)
Flanking Genome Sequence: 54-2007-1 - 3-prime edge
```
CGGAAATGGA AGTACACATA GAGGTCGTGA AGAGAGATAT CGTCTCTGGT 
TTGATCCTTC TAAGGAGTTT CATCGTTATA GCATTCTCTG GACTCCTCAC 
AAGATCATGT AAGCT
```

AT1G32170.1

Model type: Protein coding
Short Description: xyloglucan endotransglucosylase/hydrolase 30
Curator Summary: xyloglucan endotransglycosylase-related protein (XTR4)
Computational Description: xyloglucan endotransglucosylase/hydrolase 30 (XTH30); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 29 (TAIR:AT4G18990.1); Has 2058 Blast hits to 2046 proteins in 299 species: Archae - 2; Bacteria - 244; Metazoa - 0; Fungi - 398; Plants - 1344; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link: InterPro Scan - TAIR