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54-2016-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1742648 [Map]; Strand: c
      • AT5G05790.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -620; Region: promoter
      • AT5G05795.1 - [+] show detail - pre-tRNA
        Distance: -44; Region: promoter
    Flanking Genome Sequence: 54-2016-1 - 5-prime edge
    GTATGAGGTC TGATCTATGG GAGTCTATGG GAGTCAGCAG GTCGTCTGAT 
    CTATGGGAGG AAAAGATGTG GGATTATCTA ACGAAAAAGA TGTGGTATGA
    TCTATGGAAA AGCATGTGGT CTGATCGATC TTAGGGAGAA GGAAAAATCC
    TAATTATCTT CAAGCTACCA NCCCGGGCCG NCNACCACNC GTGCCCCTAC
    AATCTATAAA CAATTTGTAG CAATCACATT GTTTTTGTTA AGTAAAGCAA
    TCACATTGTT TTTTCTTTTT TTTAGTAAAT TTGAAGTTTT TCTCCTTATT
    TTATGTGTGT TTTATGATTA GTTAAGCCTT AGACATAGCC GACGTATAAC
    ACGTAAACTA TCATTAAGTA TGAACAACTT TATGTGTTGT CGCTTTTATT
    TTGAATAATA TTAGAGAAAA ACTACCTAAC AAAAAAAAAC GGNGTATACT
    AGTGGTTATT AAAATTTTGG AAAGATATGA AATGTTGGCC TAGCTAGTAG
    CTAGTTANAA TTTTATAATT GAAGTTTATT GTTATTTTTA NAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3496415 [Map]; Strand: c
      • AT3G11160.1 - [+] show detail - unknown protein; Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bac...
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 54-2016-1 - 3-prime edge
    CCTCATACGC AACATCTTTT TCCTTATATC AGACTCAGAC CACATCCTTG 
    ACGTAATCCT AAACCACTCC TTATCCTTTA GTTCTGGCCA CATCTTCTTC
    CTTAAATCGA CGTGGTCTCC CGTCCACTGA AACACACATA GAGAAGAAGA
    TGAAATAATA GCAATGGTCA CAACAACGAT GTCTTTTTAT TAGTATTTTT
    TTTTCCTTTC TAACTAACCT GTCGCCGATC TGCCTCAAGT TCCGATACGT
    TTCCCCCAAC CACAATATAA CCTTCACACA CACACAAAAA AAAATAGCAG
    GCNGACTAAT TTCNACTCGA CTCGTANAAA GAANGAAANA AAATNTAANG
    TNTAAAATAT ATCTNATNGA TTCATACCTA AGCCCAATCC CANAGCCATC
    CCNGGACCTN NAATNAAAAA CATNTTTNTT TTCCACTNTA CAATCACAAA
    NGATNTCANC AAAACGGNCA AAANATTTTN GTTTTCCTTG NNACAAATNC
    CTNNAAACCA AACCTACGGT NGCAAATTTG AACGTTACCT TTGCTACNGN
    GGGACGTATA AAAATTGCGG CNCTGNAAGG ATTTCGTCTT GATCAATAGA
    TCGCCCAANG AAAAGAAAAA NCAAAGGGGG TAATCATGAA AAAATCTTCG
    ATTTACCTGA GCGATTACGG ATCTCAAATT GTTGTTCGGG GGCATGATCG
    AAAATTANGG

AT3G11160.1

Model type
Protein coding
Computational Description
unknown protein; Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05790.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT3G11280.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G05795.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: CCT)
Link
InterPro Scan - TAIR