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54-2025-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26222078 [Map]; Strand: c
      • AT5G65615.1 - [+] show detail - pre-tRNA
        Distance: -371; Region: promoter
      • AT5G65620.1 - [+] show detail - Zincin-like metalloproteases family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2025-1 - 5-prime edge 
    GAGNAGAGAN AGGNGGTNNG CGNGGATGTA TGAGGATCGN CNACACCGGG 
    NNAAAGACNA NNNGCGNCCN GGGGCAAGGA TATGATTTAC GAAAAGTTGA 
    GGGACGAAAA TGACAAGAAG AAGATGAGAA ATATTTGGGT TTTGGCGAAC 
    GACGAAGAAG ATTGAGAGAG GCTCGAGACG TTGGAGTCGC CATTAACATG 
    TTTGCTATTA CAAGCGTTGC CATTATTCTT ATTCTCTTCA TTTTTATTTT 
    TATTTTTTCT TATTTTCTTT GAGATTTTTT GGGTTTGGAT TTGACTAAGT 
    GTGACTACAT GCGATTATGT TGTGAGGTTC CAAAGTCGAT GATATGTTAA 
    TCGATGTGCC AAAGGGTAAT CTTGTCAAGT CAAATTGAAA TTAAAACATC 
    TGTTTACGAA TATATTTATT GTTTTTGAAA TAGTTAACAA AAGCTGGAAT 
    AGCTCAGTTG GTTAGAGCGT GTGGCTGTTA ACCACAAGGT CGGAGGTTCG 
    ACCCCTCCTT CTAGCGTTTT TTAACTCTTC TTTTTCGTCC TTTTTCTTTT 
    ACCGAAAACT GTTATGAAGT AATGGGCCTC ACAAGTTCAC GAGTCACGGA 
    TACATAATAA ATAACTTGTT CGAAGAGAGC ATCCCAAGAA CAAACACGAC 
    ACGTTCAAGA TATAGTGTGA TAGTGAAGTA GCTCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26222192 [Map]; Strand: c
      • AT5G65615.1 - [+] show detail - pre-tRNA
        Distance: -485; Region: promoter
      • AT5G65620.1 - [+] show detail - Zincin-like metalloproteases family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2025-1 - 3-prime edge 
    CTCTCCTCCT CCTCTTTCCG CCCCTTCTCC TCTCCTCCGT CCATGTCTTC 
    CGCCGCCGCT GCCGCCGTGG AATCCGTCGT CTCCGACGAG ACTCTTTCCT 
    CGAATCCTCT CTTGCAGGAC TTCGATTTCC CTCCGTTTGA TTCCGTTGAT 
    GCCAGTCATG TTCGTCCTGG GATTCGTGCT CTATTGCAGC ATCTCGTATG 
    TTCACACCTT CTTCTTCGTT TTTCTTCACA GATTCATGTA TTTTTGATTC 
    GATTGTTATA GCCTCTTTGA TTGATTTTCA GGAAGCTGAA TTGGAGGAGC 
    TAGAGAAATC TGTGGAGCCA ACATGGCCAA AACTGGTGGA ACCATTAGAG 
    AAAATCGTTG ATCGGTTAAC TGTTGTTTGG GGAATGATCA ATCACCTTAA 
    GGCTGTCAAG GACACACCTG AGCTACGTGC TGCCATCGAA GACGTTCAGG 
    TTGAATAACT AATCATGCTT GTTTTTTGTG TGTTAGTTCA GTGACTTGGG 
    GGATTTATAT CTTGTTTTAC TTAACTACAT TGGTCTTATG CAGCCAGAGA 
    AAGTGAAGTT CCAGCTCAGG TTGGGGCAAA GCAAGCCTAT TTACAATGCC 
    TTTAAAGCTA TTCGTGAATC TCCTGATTGG TCATCGCTCA GTGAAGCTCG 
    TCAACGCTTA GTAGAAGGCA AGTAGTTTCT TATTGGAACA TTAAAACAAC 
    GT

AT5G65615.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Asn (anticodon: GTT)
Link
InterPro Scan - TAIR

AT5G65620.1

Model type
Protein coding
Short Description
Zincin-like metalloproteases family protein
Computational Description
Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cytosol, chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT5G10540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR