1. Home
  2. Mutant Lines
  3. 54-2033-1

54-2033-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4245110 [Map]; Strand: w
      • AT3G13205.1 - [+] show detail
        Distance: -424; Region: promoter
      • AT3G13210.1 - [+] show detail - crooked neck protein, putative / cell cycle protein, putative
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2033-1 - 5-prime edge 
    CCGCCGAGCA GATACTTAGA GAAGCGCGAG AGAGGCAAGA GGCTGAGTTC 
    CGTCCGCCTA ATCAGACAAT CACTGACTCA GCTGAGCTTT CCGACTACAG 
    ACTCCGACGT CGGAAGGAGT TCGAAGACCA GATTCGCCGT GCGAGATTGA 
    ACACCCAAGT TTGGGTCAGA TATGCGCAGT GGGAAGAGTC GCAGATGGAT 
    TTGGAGCGTG CTCGAAGCGT GTGGGAACGA GCCTTAGAAG GAGAAAATTA 
    CCGGAACCAC ACGCTCTGGG TCAAGTACGC CGATTTTGAG ATGAAGAACA 
    AGTCTGTCAA CGAAGCGAGG AACGTTTGGG ATCGTGCTGT TTCGCTCCTC 
    CCTCGAGTGG ACCAGCTTTG GTACAAGTTT ATTCACATGG AAGAGAAACT 
    TGGTAATATT GCCGGCGCTA GACAGATACT CGAGCGTTGG ATTCATTGTT 
    CACCTGATCA ACAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4244994 [Map]; Strand: w
      • AT3G13205.1 - [+] show detail
        Distance: -308; Region: promoter
      • AT3G13210.1 - [+] show detail - crooked neck protein, putative / cell cycle protein, putative
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2033-1 - 3-prime edge 
    CTCGGCGGTG ATTTGGATTG GCGCCGGAGT CTTGTTTTTG ACCTGAGTCA 
    TCCGTGGAAG CT

AT3G13205.1

Model type
Pseudogene
Curator Summary
pseudogene of vacuolar protein sorting-associated protein
Link
InterPro Scan - TAIR

AT3G13210.1

Model type
Protein coding
Short Description
crooked neck protein, putative / cell cycle protein, putative
Computational Description
crooked neck protein, putative / cell cycle protein, putative; FUNCTIONS IN: binding; INVOLVED IN: mRNA processing, RNA processing; LOCATED IN: intracellular, nucleus; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G41770.1); Has 4156 Blast hits to 2031 proteins in 228 species: Archae - 0; Bacteria - 10; Metazoa - 1529; Fungi - 1300; Plants - 749; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).
Link
InterPro Scan - TAIR