1. Home
  2. Mutant Lines
  3. 54-2042-1

54-2042-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2164157 [Map]; Strand: w
      • AT4G04400.1 - [+] show detail - transposable element gene
        Distance: -290; Region: promoter
      • AT4G04402.1 - [+] show detail - two-component phosphorelay mediator, putative
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-2042-1 - 5-prime edge 
    TGAATCTTTA TGTGTGGAAA TTGATGTGGT TCTTACAAGT TATGATTTTT 
    AGGGATTTGA ATTGTGTAAA GGTTTGAACT TTAGATTCAT GTGTTTGTTT 
    TAGTCTGTTA GATCATTGTT ACAAGTTATG ATTTTTAGGG ATTTGAATTG 
    TGTAAAGGTT TGAACTTTAG ATTCATGTGT TTGTTTTAGT CTGTTAGATC 
    ATTGTTACAA GTTATGATTT TTAGGGATTT GAATTGTGTA AAGGTTTGAA 
    CTTTAGATTC ATGTGTTTGT TTTAGTCTGT TAGATCATTG TTACAAGTTA 
    TGATTTTTAG GGATTTGAAT TGTGTAAAGG TTTGAACTTT AGATTCATGT 
    GTTTGTTTTA GTCTGTTAGA TCATTGTTAC AAGTTATCAT TTTTAGGGAT 
    TTGAATTGTG TAAAGGTTTG AACTTTAGAT TCATGTGTTT GTTTTAGTCG 
    TTTAGATCAT TAGTTTGGTT TTTGTTTTGT GAAGGGGTTT TTGGATGATC 
    AGTTTACTGA ATTGAAGAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1913038 [Map]; Strand: w
      • AT2G05240.1 - [+] show detail - transposable element gene
        Distance: -1469; Region: intergenic
      • AT2G05250.1 - [+] show detail - DNAJ heat shock N-terminal domain-containing protein
        Distance: 300; Region: intergenic
    Flanking Genome Sequence: 54-2042-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ACACTTTCTT CACTTTAATC ATGAAACCTG TTGGTAGAGA GAAATGGTGT 
    AATCACGGAA TTGAATCTGT AACTGAGTAA TGACAGCGTC CATGGTAAGA 
    GAGAGTGAAG CGGAGATTTG GAGACGATTT TGTTTTGGAC TGATTTTTTT 
    ACTTTAATTT CGGGAAATAG CCAATCCCGA GAAGAAACTT GTGTCTTGTC 
    TTTCTCATCC TTTATCTTAT AAAGTACAAG TCACTTGGCC ACTAAAAATT 
    TGCCACGTAG ATTTTGTTTC TATATTTTAT TTTAAAAAAA TCCATTAAAA 
    ACAGTTATTA TCGAGATTGT ATTACGTTAA GAAAAAAAAA CTAAAAAGAT 
    AACTGTACAT TTCTAAAACT GCAAAAATCC TANATCCCTA AATTTGCTTA 
    AACTACCACC AACCATGTTC AATATGAAGT ATGTCACGAT TTCAAACCGT 
    TTGATCTCTT ATTAAACCCC CAATCAACTC AACTTCTTCT CTATTTGAGT 
    ATTTTCTCTT TTTTCCATCG TTTTATTTTC TGAGAATTTT CATATTCATC 
    CATTTTTTGG TTCTCATCTC TATTGCCAGT TTATCTTCTT CTTCGTCGTT 
    TCATTTCTGT TTGTCGTATT CACATAATTT ANAAAAGACT CTGATCCAGG 
    TTTATGACTA CTCTGGATTC AATTTTTATT TTATATTTAT CACTTACTAA 
    ATTTTCTCTG ATTTTA

AT2G05240.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT2G05250.1

Model type
Protein coding
Short Description
DNAJ heat shock N-terminal domain-containing protein
Computational Description
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G05230.1); Has 13630 Blast hits to 13432 proteins in 2557 species: Archae - 75; Bacteria - 5761; Metazoa - 2469; Fungi - 964; Plants - 1524; Viruses - 9; Other Eukaryotes - 2828 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04400.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45380.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)
Link
InterPro Scan - TAIR

AT4G04402.1

Model type
Protein coding
Short Description
two-component phosphorelay mediator, putative
Computational Description
two-component phosphorelay mediator, putative; BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransmitter 2 (TAIR:AT3G29350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR