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54-2050-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26459594 [Map]; Strand: w
      • AT5G66210.4 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66210.2 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66210.1 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66210.3 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-2050-1 - 5-prime edge 
    GAGAAGATTA TTAGAGTTGA GTTGGTCAAA CCCAAAGCGC CGAGTGAACC 
    CCTCCAAGGA GGATCCCCAA CGAAAGATCC TTCTCACTTT CCCACTTTTT 
    TTGCCTTTTC TTCTTCTTCT TTTTTTTATT ATTATTATCT GTGTTTTTTT 
    TACCTTTGTT TTGTNGTTAT ACATTTCTGA GAATTTTAAC TGTCATTTCA 
    CGAAGTCAAG AATAATGAAT TTGNATTTTG GTGTGAAAGC GAAGACCACT 
    GACTGACCAC CCCTGNGGGA TGTGGGAAGC TCCATGTTNG GGCCCGACAC 
    NATCCCCCGG TGNGACTCAA TNCGATTCAN CTNGANAGNN TGCCATTATC 
    ATTATTTATN GCCACTAAAT TATTATGGAC TCTGGGCCTC TNATTTATTA 
    CNNNCTANCG NACTCCATAT TTTANTTNAG CCTCCTCCTA CTATCCTGGA 
    TNTTTTGCGT NTTTNGACCA GGGATTNNTG TNNNTGTTTT NAATCCCTAC 
    TNANACTGGG NNNACTNTAA CCTTNGACGN NGGGNNAACT AAATNGACTN 
    GGTNTTNGNG ACNAAATTNC CATNNNTTNT TNNCGGAAAN NAANTTTNNT 
    NNTGNNNNNT NNNACANTTT ANNGGGGNGG GGGNANAAAA AAAANGGGGG 
    GGAGGGGGAN TTTTTTTTTT TTNNNTTNGC CNCNNGNAAA AAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1913055 [Map]; Strand: w
      • AT2G05240.1 - [+] show detail - transposable element gene
        Distance: -1486; Region: intergenic
      • AT2G05250.1 - [+] show detail - DNAJ heat shock N-terminal domain-containing protein
        Distance: 283; Region: intergenic
    Flanking Genome Sequence: 54-2050-1 - 3-prime edge 
    TTGAATACGG NNGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    NCACTTTCTT NACTTTAATC ATGAAACCTG TNGGTAGAGA GAAATGGTGT 
    AATCACTGGA ATTGAATCTG TAGCTGAGTA ATGACAGCGT CCATGGTNAG 
    AGAGAGTGAA GCTGGAGATT NGGAGACNGA TTTTGTTTTG GACTGATTNT 
    TTTACTTTAA TTTCNGGAAA TAGCCAATCC CGAGAAGAAA CTNGTGTCTT 
    GTCTTTCTCA TCCTTTATCT TATAAAGTAC AAGTCACTTG GCCACTAAAA 
    ATTTGCCACG TAGATTTTGT TNCTATATTT TATTTTAAAA AAATCCATTA 
    AAAACAGTTA TTATCGNGAT TGTNTTACNT TAAGANAAAA AACCTAANAA 
    GATAACTGTN CATTNCTAAA ACTGCAAAAA TCCTAGATCC CTAAATTTGC 
    TTAAACTACC NCCAACCNTG TTCANTATGA AGTNTGTNAC NATTTCAAAC 
    CGTTTGATCT CTTATTAAAC CCCCAATCAA CTCAACTTCT NNTCTATTGG 
    AGTATTCCCT CTTTTTTCCA TCGGTNTATT TTCTGAGAAT TTTCATATTC 
    TTCCATNGTT TTGGTNCTCA TCTTTATTGC CAGTTTATCT TTNTTNNTTC 
    NCGNNNTTTC ATTGNCTGTN NGNCGGTNNT NCNCATNNCG TTANAAAAAG 
    ACCTCNGCCT CCCANGGTTA ATGACCNACC TCTGGTATNC NAGTTGCNNG 
    TTTTCATTAT NTGNGCCNTN NNCTANNNTG TTCCNGGNGN TNCN

AT2G05240.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT2G05250.1

Model type
Protein coding
Short Description
DNAJ heat shock N-terminal domain-containing protein
Computational Description
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G05230.1); Has 13630 Blast hits to 13432 proteins in 2557 species: Archae - 75; Bacteria - 5761; Metazoa - 2469; Fungi - 964; Plants - 1524; Viruses - 9; Other Eukaryotes - 2828 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.1

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 124563 Blast hits to 121753 proteins in 3731 species: Archae - 157; Bacteria - 14240; Metazoa - 45960; Fungi - 14836; Plants - 27830; Viruses - 455; Other Eukaryotes - 21085 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.2

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.3

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 122907 Blast hits to 120110 proteins in 3700 species: Archae - 157; Bacteria - 14345; Metazoa - 44968; Fungi - 14295; Plants - 27583; Viruses - 455; Other Eukaryotes - 21104 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.4

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR