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Mutant Lines
54-2052-2

54-2052-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 2789780 [Map]; Strand: c
- AT5G08600.2 - [+] show detail - U3 ribonucleoprotein (Utp) family protein
  Distance: 0; Region: intron11 (CDS)
- AT5G08600.1 - [+] show detail - U3 ribonucleoprotein (Utp) family protein
  Distance: 0; Region: exon11 (3UTR)
- AT5G08610.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: -515; Region: promoter

NNNNTNAGAC GAGGACATGA CNGTNATAGG CAGATTNNCN AGATCNGAAN 
AGTAGTGCAC ATATTTGNCT ATGTGTAGNA AGAGANNTGC NCAGATCNNT 
GACAGCGTAC CACACCCCAG GCCCGGGCAN NACGGCCTGC CGCCTNTCAC 
CTANATACNG AGGGTGTTCG TCATTCGGAT TTACTTCCTC AAACTTGACA 
GGTTTAATGA TCACTCCAGC TTTCTTCACA ACCTGCACAC AAAATGATTA 
AGAAAATGCA ACATTTTGCG AAATGGGTAT ACTACTAATG ATGAGAGTTT 
TAACAAAGTA ATGAAAAGGG TACCTCAGGT CGGTTTAGAA CTCCAACAAT 
AGTTGTGGGA TTAAACTCAG GTCCTATAGG CATACGCATA CTTTGTTCGA 
AAACTTCCTT TGATGTGTAA GGGTAAGGTA GACTCTTTGT CTGAAGTTTC 
TCAGCCTGTC AAAAATAGAT TATGTCAGCA TGAGAATCGA TCGGATGGTT 
ATAAATGAGC ATATTAAGTG AGACAGAACT GACCTTTTTA TCAACTTTTT 
CTGATATGAT AACATGTTTG AAAGAAGCGT CTTTCCTTTT TCTGAGAGCT 
TGCTCTCTCG TTTTCTTGGC TTCTTCGNGT TCTCTAACAA TCCTTGATGG 
TAAACCTCTC TTGNTTTGGT TATTGGTCCA ATGTCCCCAA CCAGCAACTT 
GAACCGGTTC TCGGGTTC

3 prime edge [+] show sequence

Chromosome: 5; Position: 1718116 [Map]; Strand: w
- AT5G05720.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: intron6 (CDS)

CNNGNTANGG CTNACANACG ATAGATGNTT AGCNCNANCT GNGCTGTCNC 
NNGNTCNCCN TANNACACAA GNGCTTNGCC TGGTGGAACT ANGCAACANT 
CCCCCCCTGG GAAAGGNTAT TTANCCTNNT TNNATCNGTT GCCCTGCTAN 
ACNGNNCCAA ATNNAACATC CGAGANGTNC GAATCCGNNN ACATGAATGG 
TNAACTCTTT GTCAACTNTA NNAGCTTNNA NATCCCCATG NNTNGGAAAA 
ACATGAATTG CNTCTTCANA ACNATAAGTT TNACAATCAC TGTCCGAATN 
CTACAGATTT TNCTTTGTCC GACTCTAGTA GNNTTNNATA TNAAAAACAT 
CATNACCAAN GAGAGCATCA NCTTTGATNT TTCTAGNCTT TTTAGAATCT 
AATAATGATA TNNTCGCTNT GGNAGGCTCA TNANCACCAT NNGGNGAAAC 
CTGATCNNTG NCGGNGGACA CATAGNNNTT GGANNNGGGT TTCACNTTAT 
AATTAAGCGN AAGGAAAATT CTTGGAAGNT GAGGNTNATG ATCAACCTNN 
GGGNTNNNTN NTAATGGGGN TGGNNCNTTT TNCCNNNGCN NTAGANNAAA 
NGNNNANNNN TNNNCTTGNT TTTGGNAAAN ANNGNGGNAN TNGGNGNGNC 
CGNGNAANAN TGNNNCCCNN CCGAANGGCT TTNGGGTGGN NNGTNTGGNT 
TNTNNNNNAA ANTGGTNGNN NNNAAAAAAN AANTTNGGNN GGCGGNGGC

AT5G05720.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleotide binding;nucleic acid binding;RNA binding (TAIR:AT4G19610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G08600.1

Model type: Protein coding
Short Description: U3 ribonucleoprotein (Utp) family protein
Computational Description: U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT4G02400.1); Has 7611 Blast hits to 5651 proteins in 499 species: Archae - 10; Bacteria - 906; Metazoa - 2522; Fungi - 1145; Plants - 309; Viruses - 73; Other Eukaryotes - 2646 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G08600.2

Model type: Protein coding
Short Description: U3 ribonucleoprotein (Utp) family protein
Computational Description: U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT4G02400.1).
Link: InterPro Scan - TAIR

AT5G08610.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G08620.1); Has 49840 Blast hits to 44437 proteins in 3094 species: Archae - 842; Bacteria - 25196; Metazoa - 7587; Fungi - 5309; Plants - 2787; Viruses - 50; Other Eukaryotes - 8069 (source: NCBI BLink).
Link: InterPro Scan - TAIR