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Mutant Lines
54-2059-1

54-2059-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 24872636 [Map]; Strand: w
- AT5G61940.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase-related protein
  Distance: 0; Region: exon13 (CDS)
- AT5G61950.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase-related protein
  Distance: -930; Region: promoter

CTCAGAATTG TATAGTGAAT TTAGATAAGG TAGACATGAA TGATTGATAT 
ATGTGTGGTG ATGGCATAGG ATGTTGGTGA CTGGAAGAAT GTGGTCAGAT 
TCTGTGGAGA GAGGAAGGTT CGGCCAGAGA TTCTGCTTTA CGAAGCTGCC 
TGATCGATGG CCTAACAAGT GACAATGTGG AGAAGTCTAG CATTGATGTT 
TCCATCTACC AGAAGACACT TTTTTATCTT TGCTTTGTTT TTTTTTTGAT 
NAAATCNATG NGATCCAAGT NTANCTNCGG TCCCTNTTAA TTCACTNTCN 
CTTGAGTCTT AAAAGNGTNG TTCCCCAANA TANAAANCNT AGAGAGCGAN 
AAAAAAAANA TNGAAAAAAA ATNCAAANCT NGACCTAANC NTNTTNTANC 
NATTNCCTNA ANCAACNTCG NTTANCNTCN TCANTANATC CANCCCCTTA 
NCCGGNTCGG TTNTNTTTNN GGTTCGTTNA AANCCCCNAA TNCNCCNANC 
NANTTAAAGT NTTTCCTTCA NCGGCAAANC CAAAACCTTT CAAAAGTTCC 
TTTTATTGTT TTTNCAACAT CACTCTCCAT TTTTGGNAAA AANAAAAATA 
TCTAATTTTT CTTGGGGGGC TCTCCAAACT TTTTCNCNAA TGTTGTTCAT 
CNTNAACATG AANACCNTTC CNATTCAATT NTTAACCCAT TTTCAAA

3 prime edge [+] show sequence

Chromosome: 5; Position: 24872520 [Map]; Strand: w
- AT5G61940.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase-related protein
  Distance: 0; Region: exon12 (CDS)

ATTCTGAGGT AGACAAAAGG TAACTGTTTC GACTTACCTC TCCTGCTATA 
CACTCACGTC TGAGATTGAC CCACCGGTTT TCTTCATAAG CTAAGCATAT 
GTGTTCTTCA TCTCCTTCAC TGTAACCAAC CTGGATCACA TCCCAGATAT 
TCTTACACTG TAACTAAGAA ATACAAAAGA ACAATAGCAC AAACATATAT 
GACCCTGTTT CAGATGTTTT ACCATTGACA CAAGCCTGTA CTTAGTGTTT 
GGTGCTAAGC CTTCTTCGTA CAGCCTGCTG ATATCTATCT CCCAGTCAAA 
AGCCTTTGTT GTTTCAGATA TTTCGTTTTC AGTTGCACTA TTCTCCCATT 
CCAATACTGA TGTTGCAAAC CCACAAAACA CCAACATAAA TATATGATAT 
GAGTACAAAA AAAACATCAC AATCATGGGG GTCAAAACCT TACCGATTGT 
GAAGATAGGC GGGCATCTAC TTGAAATGTG CTGAACAGAG TTCGTCTTTC 
CGCAACCTTC TGCGTCACAT ACCATTTTAT ATCTCAAGCG GATCACCTTT 
AGGATATCTA CAAAATTTCT ATTCCCCAAA GCACACTGCA TGTGTTTAAG 
CACAAAACAA CTATATAAGG GGAAGTACCT GCAGTTTCTG CTGGAAAGAC 
AACGAGGATG ATAAATGATA AATACCTTCA GTTCTCTGAT TGTATCTGCT 
GCCGTAACAA TGCCA

AT5G61940.1

Model type: Protein coding
Short Description: Ubiquitin carboxyl-terminal hydrolase-related protein
Computational Description: Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT5G61950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G61950.1

Model type: Protein coding
Short Description: Ubiquitin carboxyl-terminal hydrolase-related protein
Computational Description: Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT5G61940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR