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54-2062-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 446277 [Map]; Strand: w
      • AT4G01023.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G01026.1 - [+] show detail - PYR1-like 7
        Distance: -775; Region: promoter
    Flanking Genome Sequence: 54-2062-3 - 5-prime edge 
    CTCGGGATAG CGATAGCGGA CTCAAAGCTA TGGAACTTCT TCTGCAGTAC 
    CTCGGCGTGA CATGAGCGTG AAAGGGGTTC AAGAATCTGT TTTCTTTTTA 
    TAAGGGCTCA GGTCGATACC TGAATGCCAA GTATAGCTCG TAATAAAGGG 
    GGTCGCAGTG ACCAGGCCCG GGCGACTGTT TACCAAAAAC ACAGGTCTCC 
    GCACACCAAA AACCTACTCT TACAAAACTC GCTCGGTGAT GTCTCTTTGT 
    AGCCATGGTA AAGGAAGTGA CAGCAATGTT AGAAAAGGCA TCGACAATGG 
    CGGATGACGC CAAGGGCGTA GCGCAAAAGG TTGTAAAAAT GGTGGAGGAG 
    ATTGAAACAA TGGTGGAAAA AGTGGCGGCT ATGGCCACAA AGGCGGGAGA 
    AACGGCGACA ATGGCGGCNG ATATGGTGAA AGAAGCTGAG GAGACGATGG 
    AAACAGCTAA AGCTAATATG TCCAAAGCCT TTGTGGTAAT GAAGTCGGTG 
    AATTGGAACG TGTAAATCGG GTCAAAACAG AGTTTTATTG TGATCTCATG 
    CTGACATCAG CTACAATCTT TATCTAATAA GATAGATTCT CACAAGATTC 
    TTTTATCTAT CTACTTTTTA GAGAAGATGA GATCATACTT CGGAGATAGA 
    TAGGTGTCGT AAAAATTGGG AAGCTANCAG CCCGGN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 446381 [Map]; Strand: w
      • AT4G01023.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: intron2 (CDS)
      • AT4G01026.1 - [+] show detail - PYR1-like 7
        Distance: -671; Region: promoter
    Flanking Genome Sequence: 54-2062-3 - 3-prime edge 
    ATCCCGAGCA TGATTTTCCT ACCCCCCAAA ACAGAGAGTT TTGCGTTTTT 
    AACAAACCTC TGGCTTTCTC ACGTTCTTCC TCTATTCTTT CCTTGATCTC 
    CACGGCTGTG TCGAAAAGCC CTAGAGTTGG CTCGTTACAC ACAAAACAAG 
    TATCGTTCTC AGTGTGATGC TGCATTATGA AAAAAAATAA CAAGGAAAAT 
    CTGTTTTGAG TGTGTTTTCA GAAATTACGA AATTTGTTGT AAGGAAAAGA 
    TTACCTTTAG AGCACACTTG TCGCAGAAGT AATGGTTGCA GTTGGTGACA 
    ACAGGATC

AT4G01023.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT5G06420.2); Has 1605 Blast hits to 1547 proteins in 476 species: Archae - 6; Bacteria - 22; Metazoa - 955; Fungi - 207; Plants - 131; Viruses - 8; Other Eukaryotes - 276 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01026.1

Model type
Protein coding
Short Description
PYR1-like 7
Curator Summary
Encodes a member of the PYR (pyrabactin resistance )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members. PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2. PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of ABI1 and ABI2.
Computational Description
PYR1-like 7 (PYL7); CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587); BEST Arabidopsis thaliana protein match is: regulatory component of ABA receptor 1 (TAIR:AT1G01360.1); Has 397 Blast hits to 397 proteins in 30 species: Archae - 0; Bacteria - 5; Metazoa - 2; Fungi - 0; Plants - 390; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR