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54-2064-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 84666 [Map]; Strand: w
      • AT4G00200.1 - [+] show detail - AT hook motif DNA-binding family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-2064-1 - 5-prime edge 
    CNTGANNNCT NNNGCCNCGG NNATNCGANC ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCACTT CCCCAGTTGA AAACAGAGTA GAAAGAAAAC 
    AAAAAACCAG ATCGTAAAAA AAAAAAAAAN NNGGGNNAAA ATTTGGGNTT 
    TGGCANAAAA AANTTNCCAA AAANATTTTT TTTTTTTTTT GGGGGNAAAA 
    AAAAANCCCN CNGGGGATTT NGGGNNAAAA AAAATTTCCC NNCNGGGGTT 
    NGTTTAAAAA AAAAAAAAAA AANTNGNCCC CGGGGGGGNN NTTTTTTTTT 
    NGGNNNNNNN TTTTTTTTTN NNNANNAAAA AANNNTTTTT TTNNCCNNNA 
    NTNNNTTTNN GGGGGNCCCC CNAANNTTTT NNGGGGGGGG GGGGGGGNNN 
    CCCNNAAAAA AAANGGGGNN GGGGGGGGNN NNAANNNCCC NGGGGGGGGN 
    CCCNTTNNNN NNNNNGGNCN TTTTTNGNNC CCCCCCNCCC CCCNNNTTTT 
    TTGGGGGNCC CCCCCCNAAA AAAAAAAAAN NCNCTGGGGG ATNAAAAAAN 
    GGGGGGGGGA AAAAAAAANT TTTCCCCNNN TTTTTNGNGA NCCNNNNCCN 
    AAAAAAAANT TTTNGGGTNT TTTTTTTTNG GGGNNNNNNN NTTTTTNNNG 
    GGGNNNANAN AAANNNNNNG GGGGGNNNNA AAANNGGGGG GGGGGGGNCC 
    CCGGGGCCCC CC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 84666 [Map]; Strand: w
      • AT4G00200.1 - [+] show detail - AT hook motif DNA-binding family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-2064-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCT 
    AGGGACACTA TGTTTTTTTT TCTTCTTCTT GTTTGGATCA TATAAATCTG 
    ATTTTTTCCC GGAAAATACC GTTGANAACT TCTCCGGCGT GAGCTGACCA 
    GGANAAATCT GTTCTTGTGT TTAGTTCAAT TCTCGGCTGA GGAACGTTGA 
    CTGTTGACTG ATAGAGCAAC TTCAGTGTGT TGAGACCAAA CATAAAGCT

AT4G00200.1

Model type
Protein coding
Short Description
AT hook motif DNA-binding family protein
Computational Description
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 772 Blast hits to 768 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR