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54-2105-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 622810 [Map]; Strand: c
      • AT4G01460.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 54-2105-1 - 5-prime edge 
    TTCATGTGAC CAATAATAAT GTCATCGTAG AACACTGCGA GTTTGCTACT 
    AATCTAAAAT CCAAAAAGTA TAAGATAATA ATTAAAACTC CCAAAATTTC 
    ACCTCTTTGG TTTTTCTTAT TTATATCACG ACCCTTTTCT TTGTAACCTA 
    AAGTTTACAC ACGTTACTAG GAGTCAAAAG TCAACTAAGT TCGACTAAGA 
    TTTGACCACA TGACTTCACC GTTGATTTGC TCGAAGATCT GATGAACGGC 
    TGTCGCTATC TCATCTGCTG ATCCTAATTT ACAACCATCT TCCATCTGCA 
    TGCACAACAC CATTCATTTC TCATCTCTCC AAAACTAAAC AAAAATTAGC 
    AACTTACTAA AAAATTAAAC TAAAATTTTC TAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 622926 [Map]; Strand: c
      • AT4G01460.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 54-2105-1 - 3-prime edge 
    CACATGAAGG TTTAGGTTAT TATTGCCTGT AATTTTTGAA TATAAACTAA 
    CCTATGAGTT CAGTTTGACC CCGAAAACGA AAAAAGTTAA CCATGAGTAA 
    TATTTACTTC CATTTATAAA TGTTTCCCAC TTTAGTAATA ATGTTAAGAA 
    ATTGACTTTA GACGTCCGTA TTAGAATGGT TACNGGAAAT GGAAACAAAT 
    ACAATTAAAG ATGAAACATC ATTATTACTA AGAAGAAGTC GCCTTCACAC 
    TTCGCAACCT CTTTTTATAT TTTGCATATA CGTTTTATTA ATACTCTCAT 
    ATCGTCCATG CGTCTGACAA ATCTACGCTT GATAAAAAAG GTACAGCTAC 
    AACATAAATT TAAAGGTATT CTTTTGCATC AACGTCTACT GACTAAAAAT 
    ACTTGTTTAT TGTATAATGA CTCTAGTTTT ACTTTTAACA ACGAAGAGAA 
    AGGTGGCAGA ATTTTTTTAA TATTCCAATG GTAAAAAAGC ATCGTAAAAG 
    GAAGCCTATG GTCAGAGTCT CATTGACACA TCGGTCTCGC TTGTAATACG 
    TAAAACTCAG CCTATCTCAC TCACATTACT TTTTTCGAAC TTTTAATTCA 
    TATATCGGTT TCCGCATATA TTTAACTTTT GTATTCAAAG CT

AT4G01460.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G61950.1); Has 1536 Blast hits to 1519 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 44; Plants - 1468; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR