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54-2157-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 429959 [Map]; Strand: c
      • AT3G02250.1 - [+] show detail - O-fucosyltransferase family protein
        Distance: -2898; Region: intergenic
      • AT3G02260.1 - [+] show detail - auxin transport protein (BIG)
        Distance: 1025; Region: intergenic
    Flanking Genome Sequence: 54-2157-1 - 5-prime edge 
    CTCTCATTGG CTGAAAAACT CTAAAAAAAA TGAAATAGTA TACATGTTGC 
    TAGCTCTCTC TTATGTTATT ATGTTTTTGG ATCAGTGAAC CATTGAGCTT 
    AATTAGACAT TCAGACCCGA GCCACGTTTG CAGCATTGGA CNGGAATCTT 
    TCGCCGGATT TTGAGCTTCT CTGCAACCAA AGCGAATATA AGAGAAGAGA 
    AGAGAACAAA AAATCCTAAT GCGTTAAACT TGGTGATGGG CTGAATTTGA 
    AGGCCCATCA AACTAGGGTG ACTATGGCCT ATGGGCTGTT ATATTTATTT 
    TCTTTCTTCT ATGCAGATAA GCAATAAACT TGAGAATGGC ACGTCATGCT 
    GAATGCATTG AGCCACCGAC ACAACTTTCT TTATGCTCGT GGAGATCTTA 
    ATTGTTAAAT GTCCTTTTTC TACCAATATT AATTTCACTT GTTTTTTTTT 
    GTTCACTTGT TCTTCATTTA AATAGGTTTA TCATCCCGAA CAANAAAATT 
    TATTGGACTT TTTACACTGT TTATTATTTT ATGGTCAAAC TCAATATAAA 
    TAAACCGGCA TATTTTTATT GACTTTCTTA ATTTTTTGGT ACGGGAATCA 
    TAATTCTTAA AATCACCACT TAAATGCATT TTGATTTTTT TTATTTTTTT 
    TGGTAAAATG TGAANATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 430075 [Map]; Strand: c
      • AT3G02250.1 - [+] show detail - O-fucosyltransferase family protein
        Distance: -3014; Region: intergenic
      • AT3G02260.1 - [+] show detail - auxin transport protein (BIG)
        Distance: 909; Region: intergenic
    Flanking Genome Sequence: 54-2157-1 - 3-prime edge 
    AATGAGAGAG CTCTATTTCA GATCCACTCG CACAAAGTGC GCGTTGAGCG 
    AGTGAGAGCG ATTCTGTGGG TGTACCCCTT TCCAAATCAT GCCTTTTTCA 
    ATCGACGCAT TCCTCTCCGA AATACACATC GCCGTGACTT TTGTTTTTTT 
    GCTTTCTTCT ATANACCAAT GTTTACCGAA CCAATATCTA TTTTANNTNC 
    AAAACCACAT AGTNTNACAT TTTCTCCTCT NTGGGGGATG NCCCTAAATA 
    CNCAAACTNT TTTCCGGNGA TAGAGAACTT NCTATCTGAN GNANAANNNG 
    TGTGAGNTNC NCNCCGGGGN GAGAGGAANA AAATTTTTCA NCNTNTTTTC 
    AAANCCCGGG NCCCGGNNAA CAAAANACAA TTNGGGAAAA AAAGGGGNNT 
    TTTNTGGGGT TTAANCCCTN NCCCNTGGGN TTTTTANNNN AGNAAAAAAN 
    NGCGGGGANT GGGAAAAAAA AAAAAAAGAG NTTTTCAAAA AATTTTTTGN 
    TTNGGGGGGG GGGANTATTT TNNCNNNNNN GGGGNGTNCN AAAAAAAAAG 
    GNNAAAAAAT NNGNNAAAAN TTTTTTTTTT TTTTTTTGGG GANGNCCCCC 
    CCCCCGGNGG GNAANANNTT TTTCANANNA NGGNNTTTAA AANTTTTGTG 
    NNTNGGGGAA AAAAAAACNN TATTGNAANG CCCCNGGGGA AAAAAAAACG 
    NNTTTNTTAA AAAAAAAAAA NANTCCCCCC TTTAAAAAAA AAAAAAAAAG 
    NGGGGGGN

AT3G02250.1

Model type
Protein coding
Short Description
O-fucosyltransferase family protein
Computational Description
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT5G15740.1); Has 830 Blast hits to 821 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 830; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02260.1

Model type
Protein coding
Short Description
auxin transport protein (BIG)
Curator Summary
Calossin-like protein required for polar auxin transport
Computational Description
BIG (BIG); FUNCTIONS IN: ubiquitin-protein ligase activity, binding, zinc ion binding; INVOLVED IN: response to auxin stimulus, indeterminate inflorescence morphogenesis, photomorphogenesis, root development, auxin polar transport; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Armadillo-type fold (InterPro:IPR016024), Zinc finger, ZZ-type (InterPro:IPR000433), Zinc finger, N-recognin (InterPro:IPR003126); Has 1182 Blast hits to 997 proteins in 123 species: Archae - 0; Bacteria - 4; Metazoa - 768; Fungi - 44; Plants - 189; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).
Link
InterPro Scan - TAIR