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54-2164-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 90414 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2164-1 - 5-prime edge 
    TTCCCGAGCA TAAACGACCA GACGCCGTCG TTTCAATCTG CTTTGAGGCT 
    CAAGCTCGTC TCAGAGACCC TATCTACGGC TGCGTCTCTC ACATCGTCTC 
    TCTTCAGCAA CAGGTTAATT ATTCTTTTCA TAACGTTTAA TTATATGATT 
    AGTACTATTT ATGATGGGAA ATTGCAACAG TTTTAAGTTG ATCTACTGGT 
    NCTTCCTTAT TATTCGGTNC ACGGTTGGAT CATTTTNNNA AAAANNNNNN 
    NNTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 90298 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2164-1 - 3-prime edge 
    CTCGGGAACA TGGTGGAGGA GTTTGGAGAC GTTGCTCGCT CCGAACACCT 
    TGTGAACCGC CGCGAAGTGC GCCGCTCCTT GCTCGGAGTC AAAGTAAGGA 
    GCGAAGATGC AGCCAGCGAC ACACTTCCTT CTCAAGAACT TGCACGCGCC 
    GCACNGGTCC TCCTCCTCCA CCGCTGCTGC TGCTAGGGTT TCCGCTACTG 
    CTCATCTTCC TTTTCTACCA CACAAGTCCT TTTTATTTTC CTTTCCTTTT 
    ACTAGCTAAG TGGTGATTAG GGTTTTGAGA TACATGGATT TAACTCATCG 
    AGATTATGAT GCTTTTTGGT TCGTGATTAG AGAAAAAAAA GAAAGGGAAC 
    GTTTGGGAGA GAAGAAAAGA GAGAAGGAGG AGATCGGACG TAAGCAAAAC 
    TAGGGTTTGG TTGTTGGTAG ATAATAAAAA AAGTAAAATA ATAATTTAAT 
    TAGTCTTGTT ATTACCAAGA CTAAAAAATA AAAAAGAGGT TAAGACAAGA 
    AGAAGAAGAA GAAAAAAAAG ACTTCAAAGC AACGCGATGG AGCGTACTTG 
    TCTCGTGTTA AGCTCTTTGC GTGAAGCAAA ACATTCCATA TCTTTCAACT 
    TCTTCATTGT TATTCCCTTT CCTTCACTTT TTCTACTTCT GGNTTAATTT 
    TATTTTTGTT ACATCGAACC ACACAACTAT CTTATGGTAT ATACCAAT

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR