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54-2169-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26867521 [Map]; Strand: c
      • AT5G67340.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: 54-2169-1 - 5-prime edge 
    GTGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTAAT ATAAGTATCA TATATGCAGA TGTGTATCAT 
    GTATTCATGT ATGTATAAGT TAGAACTTAG AACAACCTTT AAGGTAAAGC 
    AAGATCAGCC TCTCCTCTGA TTGCTTTGTC TGTGTGCTTT AAAGTACTTT 
    CAGAAGATTC TGTGCCTGAA ACAAAATCAT ACAACAGTTA TATTACTATA 
    AGAGTCATGA GACATTTACC AAACAAAGAA GAGGAAACAA AAAAAGAACC 
    TTCTCTTTGC CTCTAGCTGT TCCTGATTTA GTAAGTGCCA CAAGAGGTGG 
    AATCACTCCT TCTCTTATGA CATTGTTGCA GAATTTCGGG CTATGCGTAC 
    AAAGCTGCAA TAGTGCTGCA GTTGCATTCT CTTTGCCTCT TGCTGAACCT 
    AACTCCACAA CTTCCACCAA TACCGGTATT CCTCCTTCTT CGCCTATCGC 
    AATCTTTCCT TCTCTAACCG TTGCAAGATT CGCTAGCACC ACCACAGCTT 
    TCTCCACCAT CCCAAAAGCA GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26867521 [Map]; Strand: c
      • AT5G67340.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: 54-2169-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCT 
    TTATATAAAT ATGAAACTGT TACCTCTAAA AGATTGTGTA TTTTTTTAGT 
    ATTTCATCAA TAGTTGGTTT ATTTGTAAAG GATATTATTC TCTGTGCTAT 
    TTTCTTCTTC TTTTCTCATT GAAGCAAATA TTTCAAAATT GAATTGTTGT 
    ATTCGACATT GAACCGATGG ACGGTCCCGC CCATTTGATG GTGATAACAA 
    GTTTTATTTT TCAACAATAA AAACATGTTA TTAGATTTAA AATGTGGTTG 
    TTTTGCGACA ATAGGTCATC AAATGTACGT TTCCCTTATG TTATTAAACG 
    TTCAATAAAC TATGAATTGT CTGTGTGACG TATAACATAA TGTTTTAATA 
    TAAGATTACG TAAACATATA TTGTTATGCT GAAAAATTCT TAATATTATT 
    ATTGGGTGAT TGCTTTAGCC CTATGCTCGC TCATGAGTGA GTAAATGGCC 
    TTTGAGTTTG AGTTGCGGAT TTGATATTCA AACTATAATA TATAAAATGA 
    GAAAAAAAAA NCNTTNTNTT ATNCAAAANG ATGGGGANAA ATTGACGTCC 
    TAAATAAAAA CATNATTGCT TTAATCATGC CAAGCACCAC TCCTTATAAN 
    AANAATCTNT CNTGGATNTA ACCAAAACAA AATNNTTTAA AGTAANCCCA 
    ACTTTTTGAT NTNTNACTTT CNCATNATTN TCGNNATTTN ATTATAANGG 
    TNCGCTT

AT5G67340.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: endomembrane system, ubiquitin ligase complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR