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54-2178-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10973236 [Map]; Strand: w
      • AT1G30835.2 - [+] show detail - transposable element gene
        Distance: 4358; Region: intergenic
      • AT1G30840.2 - [+] show detail - purine permease 4
        Distance: -1209; Region: intergenic
    Flanking Genome Sequence: 54-2178-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA CTATAGAGTA GTAAATAAAA TCTTATTAAT 
    TATTAATCAA GAGGTAACGG TTAAAATAAA TTTATTAAAA TATTTATGTC 
    ATTCACCTAT ATATTTACAT TAATGTGTGT GTGTTTATGC GTGGAGACTT 
    AACGTTACAC ACATTTTTTT TTTTTTTANC CNNAGGGCNT TNTTTGGNTT 
    TTTTTNGGNN GGGGGGAAAA NGGGGGTTGG GCNNCAAAGG GGGNNNCGTC 
    CTTTNTNGGG GGGGNNNTTT NNAGANANAC ANNANATNNN NNCNANNANN 
    AAAANNNNNN GGGAAACNCA ANNCCNNNNN GGGGGGGGGN CNNNNNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10973235 [Map]; Strand: w
      • AT1G30835.2 - [+] show detail - transposable element gene
        Distance: 4357; Region: intergenic
      • AT1G30840.2 - [+] show detail - purine permease 4
        Distance: -1210; Region: intergenic
    Flanking Genome Sequence: 54-2178-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    TGTCACTGTG TATTTCATGT AACTATGTTT GTAGACAGGA AGTCTAATGC 
    TTCGACTGGT GTTTTGAACA ATATAATAAT ACTTTTTCAG CTAAGTTGAA 
    TTTTACTTTG GGTTTGTATT AATTTTCACC TATCAAGAAA AATGAGAGGA 
    TACAAAAATT TTAGTTATAA ACATAGAAAA GAAGAGTAAC CAAAGGATAA 
    TATTTCTCTT GTCTTTTTCT TCTATTTCCA TTGTATAATC TAATTGGTCA 
    CATTTAATTG TATCCATTTA TAACAAACAA TCTTATCAAA ATATTTTCGC 
    GTAGACCCCT AGTTTCAGAA ATAGAGTGCA GAGATTTTGT GGCAGCGATG 
    AATGATCTAG GAAAACTAGA TGTAGACTGT TTAGTGTGTA AATACAAAAA 
    TAAAGAGAAA ACTCCTTAAT ATAAAATGAA ATAAGATGTA ATAAAAGGTT 
    CAAATCTTAC GAAATAGTAA GCTGTTTAAG AGAATAAAAA TAAATTAGAT 
    TTACCATATA GCTCGCCTTT TTTAGTGTTA TACGTATAAA AATAGTGTTT 
    TGAAACTGAA AAATATTTCT CAGTTTCTTA GGGATTTTTG TTATGATAGT 
    TCATATTTTT GAGAATTTTC ATGAAATAGT TGTTCTATTA TTTCGAGCAT 
    AAACATGAAT CTTTGGTACA ACAAGTCAAC TAAATAATCT TCATGATTTC 
    TAAA

AT1G30835.2

Model type
Transposable element gene
Short Description
transposable element gene
Curator Summary
Member of Sadhu non-coding retrotransposon family
Link
InterPro Scan - TAIR

AT1G30840.2

Model type
Protein coding
Short Description
purine permease 4
Curator Summary
Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.
Computational Description
purine permease 4 (PUP4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease 1 (TAIR:AT1G28230.1).
Link
InterPro Scan - TAIR