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54-2183-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 74986 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -534; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -534; Region: promoter
    Flanking Genome Sequence: 54-2183-1 - 5-prime edge
    ATAAACACGA TAAAGGGAAA GTAATGAGTA GTGGCAAAGC TAGGAAATGA 
    TAACATATGA GGACTGGCCA GAGAGAAAGA GATAGAAATG GAAACAAGGA
    AGACGAAATA GCGCCCAGAA TTAGCTAGTA AAAACAGTCC AAGTCAAGTT
    TAAGACTTGC TCCGGCAGAT CCACCACAGG ACACCAAAAT CAGAGACATG
    TTCACTAAAA TCGGAGGAAT TTGTCGCCGA GAAAGCAAAA AGAAAACACA
    ATCCAAGGTT ATGGAATCTA CGAACCTGTG GGTGGTGGAT CTATACACGA
    CGCCCCTCCA TTTTCGGAAC TTGCTCTTCT CCAAGCTAAA TCTTATCTGA
    AATAGAAGAT ATTGTGTTAC AGACTAGTTT ACTGAGTCCG GTGGGTTACA
    GGGCGGGCGG CGATGGAGCA GAGTCCTCCT CAAAAAAATT CCAGTCTTCT
    TCTTATCGCT CGATCGACGA ATTCCAGGCA GTGGCATTGA CTATTGCTGC
    ATTTCTTTCT GGGTAAGCCG GGCCTCTCGG TATAGGCCCA AACCATTCTA
    AGGCCCAAAC CATTATATTA AGTNGGNNGG TCCNCCAAAG TCAGCAGCNG
    CTNGAACAAG AACGACTCTN CANCTGCTNT TNTNCCGCTT CCTTNCTGNN
    NNTTNNCCNN NNANATCCTN NNNNCCCNAN AANNGANNA
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 74875 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon2 (5UTR)
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -645; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -645; Region: promoter
    Flanking Genome Sequence: 54-2183-1 - 3-prime edge
    TTNACGANGG CATGTNNGGA TTCTGGGTCA ACACATATCT NTNACCGGGA 
    TTAGAGAGAA CCCGGATTNT GGTACTGCTA CCGGTTTAAG ACAACTACCA
    GCCATTGATA TATTNCCTTG NTTGATANAA TTNNTNNGAT TTTGATAGCT
    NCNAAGGCTG AGACATTGGG TTATGTACTC GGAGGAGTGT ATATATACCN
    ATATGANATG ATAANGATCA CCATNCACNG GCCNNTNACC ANACGGNCCT
    TNTTGTNTGC TTTACTACTA TCCATGAGAG GGAAAGCCTA TCGTCTGTTT
    GCTTAGGGTT CCTAAACATT TTTCTTCCTT TGATTTCCAA AGGAGCTACA
    CCCAAAGGCG TTCTTAGAGT GATGGGTGTA CAAGGCTTAA CTATATATCA
    TGTCAAGAGT CACTTACAGG TATTCTCAAA CTGTGTGGCA TCTTGTNTCG
    NCTNTCTTTN TNTTACCCTT GCTGATTNTN GCNTTNGNGN ATNNNNANNC
    NNAAATATNN ACTTGCNNAN NNTNTNNCNN ANNNNNNNTN TNAANGNNNN
    GNGNACNTNN NNNNNNT

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR