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54-2183-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 74986 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -534; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -534; Region: promoter
    Flanking Genome Sequence: 54-2183-1 - 5-prime edge 
    ATAAACACGA TAAAGGGAAA GTAATGAGTA GTGGCAAAGC TAGGAAATGA 
    TAACATATGA GGACTGGCCA GAGAGAAAGA GATAGAAATG GAAACAAGGA 
    AGACGAAATA GCGCCCAGAA TTAGCTAGTA AAAACAGTCC AAGTCAAGTT 
    TAAGACTTGC TCCGGCAGAT CCACCACAGG ACACCAAAAT CAGAGACATG 
    TTCACTAAAA TCGGAGGAAT TTGTCGCCGA GAAAGCAAAA AGAAAACACA 
    ATCCAAGGTT ATGGAATCTA CGAACCTGTG GGTGGTGGAT CTATACACGA 
    CGCCCCTCCA TTTTCGGAAC TTGCTCTTCT CCAAGCTAAA TCTTATCTGA 
    AATAGAAGAT ATTGTGTTAC AGACTAGTTT ACTGAGTCCG GTGGGTTACA 
    GGGCGGGCGG CGATGGAGCA GAGTCCTCCT CAAAAAAATT CCAGTCTTCT 
    TCTTATCGCT CGATCGACGA ATTCCAGGCA GTGGCATTGA CTATTGCTGC 
    ATTTCTTTCT GGGTAAGCCG GGCCTCTCGG TATAGGCCCA AACCATTCTA 
    AGGCCCAAAC CATTATATTA AGTNGGNNGG TCCNCCAAAG TCAGCAGCNG 
    CTNGAACAAG AACGACTCTN CANCTGCTNT TNTNCCGCTT CCTTNCTGNN 
    NNTTNNCCNN NNANATCCTN NNNNCCCNAN AANNGANNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 74875 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon2 (5UTR)
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -645; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -645; Region: promoter
    Flanking Genome Sequence: 54-2183-1 - 3-prime edge 
    TTNACGANGG CATGTNNGGA TTCTGGGTCA ACACATATCT NTNACCGGGA 
    TTAGAGAGAA CCCGGATTNT GGTACTGCTA CCGGTTTAAG ACAACTACCA 
    GCCATTGATA TATTNCCTTG NTTGATANAA TTNNTNNGAT TTTGATAGCT 
    NCNAAGGCTG AGACATTGGG TTATGTACTC GGAGGAGTGT ATATATACCN 
    ATATGANATG ATAANGATCA CCATNCACNG GCCNNTNACC ANACGGNCCT 
    TNTTGTNTGC TTTACTACTA TCCATGAGAG GGAAAGCCTA TCGTCTGTTT 
    GCTTAGGGTT CCTAAACATT TTTCTTCCTT TGATTTCCAA AGGAGCTACA 
    CCCAAAGGCG TTCTTAGAGT GATGGGTGTA CAAGGCTTAA CTATATATCA 
    TGTCAAGAGT CACTTACAGG TATTCTCAAA CTGTGTGGCA TCTTGTNTCG 
    NCTNTCTTTN TNTTACCCTT GCTGATTNTN GCNTTNGNGN ATNNNNANNC 
    NNAAATATNN ACTTGCNNAN NNTNTNNCNN ANNNNNNNTN TNAANGNNNN 
    GNGNACNTNN NNNNNNT

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR