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54-2196-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13531615 [Map]; Strand: w
      • AT3G32980.1 - [+] show detail - Peroxidase superfamily protein
        Distance: -1618; Region: intergenic
      • AT3G32990.1 - [+] show detail - pseudogene, ATP synthase C subunit, blastp match of 86% identity and 9.3e-27 ...
        Distance: 2568; Region: intergenic
    Flanking Genome Sequence: 54-2196-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTT GCCAGAAAGA CAGCTTAAAC TATTGTTAAA 
    TTTCAATTAG CTATCTAATT AGGTGAACGG TTTCAAATTT TTTATTTATT 
    TATTTTGTAC ATTTCCTCTT TTCCCGGCGA TGGAAATTTG AATTTCTATT 
    ATAATGTCAA AGTGACAAGT TTTCGCCTTC TTCACGTTAG CATATTTTCT 
    TTGTTTCTAG CTGCCCATTA GATATCGTGG AATAATGAGC AATTGACTTT 
    GGATTCTTGA TGAAACTATT AGGATGAACA AAATATTTAT CTATAGAAGA 
    CAATATATTA GAAGATCTGA GAATCGTAAT AACGAAATTA GTTCTCTTTC 
    TTCTGTCGTT CGGAAATATA ATCGAAACAT CCTTACGTCT AACACAAATC 
    TCTGTGGTAA AGATAACGAA TTTAGCGACT ACAAATTTGA GCATTAAATC 
    CTCGCGAAAT CTCTATGACA AGATAACGAA AGATTGCGCC GGTGTTATGG 
    GGAAGAGAAA GATTTTGCCA AAAAAAAATG ATTATAGAGA TATTTCTCGG 
    TTTATGGAAG TAGCAGTCGT ATGTGTTCAT GTATTTATTA CCGCAGTAGA 
    GTCGTTGTCC AGACCAAAAA ACAAAGCCAC CATAAAATTT CTGAGAACAA 
    GTTAATGTGA CGATGATCAG ACAAGAGATT GGAAGATTCT GGAGAACATT 
    TAAGAGCAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13531617 [Map]; Strand: w
      • AT3G32980.1 - [+] show detail - Peroxidase superfamily protein
        Distance: -1620; Region: intergenic
      • AT3G32990.1 - [+] show detail - pseudogene, ATP synthase C subunit, blastp match of 86% identity and 9.3e-27 ...
        Distance: 2566; Region: intergenic
    Flanking Genome Sequence: 54-2196-1 - 3-prime edge 
    TTTGAATACG GNNGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATTT 
    TCTGGACTCC ATTCTTAATT GACTTATTAT AGTTTGAGTT TTAAGAAGAA 
    AAAAAAANCN CTNTTTNCAA ANGCCCTATT TTANATNCGN GTTATNTGTN 
    CTAAANAAAA TNGCNACNAT NTTNGTTTAG NCNCAAATNT TACCANCTNT 
    TTTAANACCG TCNACNGACT NTCCNCGGCC NCGGGGCNTN CNTANAATCG 
    GAAAAAAGTT TCATNTTACC ANCCATTTNG ANGCNTNTTT TAAATCCTCT 
    NTNTNTCGNC AGNGNCNCAT TNTNTAATTN ATNCATCTNG AANCATAATN 
    TAAATTTAAN CANTNTAAAT GGGTTAAAAC TTTNGTTTTT GAATNAAGTN 
    GGGTTTAANG AANGATAGGG GTTNCATTNG CTCATTTTAT ATATANATTN 
    ACNGTTTTCA ANATNTTTTN TTAAAAANCA TTTNTNTCAA AAAATTTNTA 
    ANCTTAAAAG TTTTTTTTTT NGCNAAGGGA ANTNNCNAAA ACNAAAANNA 
    AAAAACCNTT TNNCCCTNNN NGGGCCNGGT TTTAAAANTT AANCCTTNAA 
    NTTTTTTTTT CCNNACCNGN CCCAANTNTT TNNGNTTTAA AAAGTTTTNN 
    CGNNGGGTCA ACCTTANTTT CCCCNNNTGG CNNGGNTTTC CTTTTTTGNC 
    ANAAAANNAA AAAANNTTTT TTNGGGGGGG CCNTCCCNAN NCCCTTTTTT 
    TTNNCTTTTA NCCAN

AT3G32980.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase CB (TAIR:AT3G49120.1); Has 4309 Blast hits to 4278 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 49; Plants - 4212; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G32990.1

Model type
Pseudogene
Computational Description
pseudogene, ATP synthase C subunit, blastp match of 86% identity and 9.3e-27 P-value to SP|P06286|ATPH_TOBAC ATP synthase C chain (EC 3.6.3.14) (Lipid-binding protein) (Subunit III). (Common tobacco) {Nicotiana tabacum}
Link
InterPro Scan - TAIR