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54-2219-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3950600 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-2219-1 - 5-prime edge 
    AGTCTTTGGC TTTGTGTCTT CTAACAAGGA TACACTACTT AGGCTTTTAA 
    GATCGAGTTG CGGTTTAAGT TGTTATACTC AATCATACAC ATGAAAACAA 
    GTCATATTCG ACTCGAAAAC ACTAACCAAC CTTCTTCTTG CTTCTCAAAG 
    CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13590442 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 6468; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -11358; Region: intergenic
    2. Chromosome: 3; Position: 13591154 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 7180; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10646; Region: intergenic
    Flanking Genome Sequence: 54-2219-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTCTT TGAAAGACTC ATATGGACTT TGGCTACACC 
    ATGAAAGCTT NGAGANNCNA NAAGTAAGGT CNGGCTAGNG NTTTGGAGTC 
    GAATATGACT TGATGTCATG TGTATGATTG AGTATTACAA CTTAAACCGC 
    AACCCGATCT TATAAGCCTA AGTAGTGTNT NCTTGTTGGA AGACACANAG 
    CCAAANACTC ATATGGACTT TGGCTAAACC ATGAAAGCTA CCAGANNCNG 
    CNGNNNANCN GGNCTGNTNN TATNGAGTCA AATATGACTT GATGTCATGT 
    GTATGATTGA GTATTACAAC TTAAACCGCA ACCTGATCTT ATAAGCCTAA 
    GTAGNGTTTC CTTGTTAGAA CACACAAAGC CAAAGACTCA TACGAACTTT 
    GGCTACACCA TGAAAGCT

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR