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54-2243-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7227238 [Map]; Strand: c
      • AT2G16670.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-2243-1 - 5-prime edge
    GAAAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATCTGTCG GATGGGTCAC CCAGCTGCGA GAGTTGTTAG
    TTTGATACCC GAGAGTTCTA TTTCTGTTTC TTCTACACAT TTGAATAAGG
    CATGTGATGT TTGTCATCGT GCTAAGCAAA CAAGAAATTC TTTTCCTTTG
    AGTATCAATA AAACTTTGCG AATTTTTGAG TTAATTCACT GTGATTTGTG
    GGGGCCTTAT CGCACACCGT CACATACCAG TGCTCGCTAT TTTCTAACTA
    TAGTTGATGA TTACTCAAGA GGGGTTTGGT TGTACTTGTT GAACGATAAG
    AGTGAGGCGC CATGTCACTT GAAGAATTTC TTTGCAATGA CAGACAGACA
    GTTCAATGTC AAGATAAAGA CGGTGAGAAG CGACAACGGA ACAGAATTTC
    TGTGTTTGAC TAAATTTTTC CAGGAACAAG GAGTTATTCA TGAGCGATCT
    TGTGTGGCTA CTCCAGAGCG AAATGGCAGA GTTGAGAGAA AACATAGACA
    TTTACTTAAT GTTGCAAGGG CGTTGAGGTT TCAAGCCAAT CTACCAATTC
    AGTTTTGGGG AGAGTGTGTG TTGACTGCAG CATATCTTAT TAATCGTACT
    CCAAGCTCGG TGTTAAATAA CAGCACACCA TATGAACGTT TGCATAAGAA
    ACAGCCTCGA TTTGATCATT TGCGTGTTTT TGGAAGCTAC CANNCCGGNC
    CGTCGCCCCN NGN
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7227234 [Map]; Strand: c
      • AT2G16670.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-2243-1 - 3-prime edge
    GAAANCGGNN GGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCAT 
    TTTAATTCCG ACTATGCCAC AGCTCATAAT TCTTCTCCTC TTTAACCGTG
    ACTGATGCTG CGATCTCCGT ACTGCGAAAG TGAAACGTTC CCCCAACACG
    CCTACCAGCT CCCATCACCA TCCTCGAAGT GCCGGTCCTG CACGACAAGG
    AAGCGATCAG ACATTTGCAA AACACATCGA TTCTCATCCA TCAATTGTCC
    AATTGAGATT AAATCGGACT GAAATTCTTC AACATAAAAT ACAGATATCA
    TAACCAAATT TGACCCAAGT CGAACTGTTC CTTCTTTAAC CGAAATTCGT
    TCCCTACCAT CAGCTAGAAC TATCAAAATT GGGTCCATAT CTCTAACATT
    CATCAATATA TCAAATTTTC CCGTCAAATG ATGAGAGGCT CCAGTGTCCA
    TTATCCAAGA GGGTGAATTA AACTTACCGG TTAGCTTTTC AGTTGCAGCA
    TCTTTCCCGG AGTTGAGAAT GCTTTTGATG GTTCTCCACT GACTGTCGGT
    GAGACCATTC ACACCATCAC GGTCTTCGTC AGTGAGAGCA TAGTTAGCTT
    GCTCATATGT GTCGTGGTTT GGAACCGTCA CACGATTGGC ATAGGCAGCT
    GCACCACGTC CACGCCCTCC GCTCGAATTG GTTCCTCCAC GACCTCGAGT
    TTGCAATGAT CTGCTCCGTG GCCTATCTCC CCACCACTCC GGATAGCCAA
    TGACGGCATA A

AT2G16670.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.2e-190 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)
Link
InterPro Scan - TAIR