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Mutant Lines
54-2247-1

54-2247-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 26497473 [Map]; Strand: c
  - AT5G66320.1 - [+] show detail - GATA transcription factor 5
    Distance: 0; Region: intron1 (5UTR)
  - AT5G66320.2 - [+] show detail - GATA transcription factor 5
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 54-2247-1 - 5-prime edge
```
CTCGTGACTG ACTCTGTTTG TGGGTCGTTT TCGTAATTGA GTTTCCCCGG 
TCGTCTGTTT TTTTTGGGGT TCGTGATTTC TTTTTTATTC CTTCTCTCTC 
TCTTGGAATT GCNAAAAANA GGAACGTTTT TTTTTACNGT TTCGTTNGAA 
AAAAAATGNG AATAAATNGG ACATAAGTAT TGAATT
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 26497589 [Map]; Strand: c
- AT5G66320.1 - [+] show detail - GATA transcription factor 5
  Distance: 0; Region: intron1 (5UTR)
- AT5G66320.2 - [+] show detail - GATA transcription factor 5
  Distance: 0; Region: exon1 (5UTR)

GTCACGAGAC TGAAATGAAA ACGCAACGAA CGAAGCAAAT TCAAAGAACA 
TGAAAAGAGA CATACGAAAC CCTTAAAAGA AAACCCTAAA ATTGGACAGG 
AATTAGGAAA AAGTACCTGA TACAGAGAGA AGGAGGGAGG AAGGAGCNGG 
TGGCGAGAAG AAGAAGAAGA AGAAGAAGAA AGAGATTAAA GGTTAAAGAA 
AAGGGTCAAG AAGAGATGGT TATGTGAGTT TGGTAAAGCA TTCAATTTGG 
TAATCTCAGC CTCTCCCTTG GCTACTAAAA ACTCCTCTTT TTCTTATCTC 
TAGAAGAAAC GCTTTTTACT CTCTCTCCTT CTTTCTTTTA AAACATAAAA 
AAGGGCAACC AAAAAAAAAG TGTTTTTTTT TAAGGTAGGA AATAACTGAC 
AATAAATCTA TAAATTTTAT GTATCAGTAN AAAAAAACGG CNCTGTTCAA 
TTNCAGAGAT AAAATAAGAT CTTCATCAGT CATCATCANA GTNTTTNTTT 
CCTAAAGCT

AT5G66320.1

Model type: Protein coding
Short Description: GATA transcription factor 5
Curator Summary: Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description: GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66320.2

Model type: Protein coding
Short Description: GATA transcription factor 5
Curator Summary: Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description: GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR