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54-2255-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10336914 [Map]; Strand: c
      • AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -2343; Region: intergenic
      • AT5G28380.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 1809; Region: intergenic
    Flanking Genome Sequence: 54-2255-1 - 5-prime edge 
    CCTTTTANNA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACAGCCTGT CTNTGCTGGA GAGAAGCGCA TGTAACTTTC 
    GGCACATAGC TTCGATTGGA ACAATATTGG ACTATATGGA GAGCTGTCTG 
    TCTGGGCAAT CTGTGGATAT GTTTCCCGTC TCTTGGTTCG TCGTACAATG 
    TCTGGAAAAT TGCTCACGAA GTTGGTCGTT TGCAAGTGGT GTCAGTCTGA 
    ATTGTCTTGG AAAAACGATC ATAACTCTCA AACCATAACC TCAAATCGTG 
    ATCCGCTTTT TTCTGTGGCT TCGTGTGACT GTTGCTGATT ATTCCAGAAA 
    ATATCGTAAT TTTCCGAGTT GTTTTGTTGC TCCATTGGCG ATCAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 571968 [Map]; Strand: w
      • AT1G02660.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 54-2255-1 - 3-prime edge 
    GTGAAAAAGG AACAAAAGGG GCCAGTATTT AATATTTGTA ATTATAAATT 
    GTGCAAAAGT ATTGTCTTAA CAAGTGGGAA GAACCAATTT GATTACACTC 
    TATTAGTCAA CAATCATGTA TATATTGTAA TTCACAATTA TATTTGAGAT 
    TTCTTCTTTG TAACCACTGA TTGCTTGTGA GTTGTGACAA AAAAAAAAAA 
    AAAAAAANCC CCCGNNNGGG NAAAANTTTN NTTTNNAANT TTNAAAANCC 
    CCCCCCNNCC CNNAAAAAAA AAAAANCCCN NNCCCCCTTT TNAAANNNAA 
    NNGGNAANNN NNTTTTNNTT TTNNNGGGNT TTNAAAAAAA AAAAAAAAAA 
    NCCCCCCCCN NNNNCCCCCC CCCCCNNNTT TTTTTTTTAA AA

AT1G02660.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G62590.1); Has 747 Blast hits to 737 proteins in 148 species: Archae - 0; Bacteria - 27; Metazoa - 209; Fungi - 146; Plants - 175; Viruses - 15; Other Eukaryotes - 175 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28370.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 52907 Blast hits to 14569 proteins in 306 species: Archae - 7; Bacteria - 68; Metazoa - 890; Fungi - 845; Plants - 49290; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28380.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR