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54-2256-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19595371 [Map]; Strand: c
      • AT2G47840.1 - [+] show detail - Uncharacterised conserved protein ycf60
        Distance: -370; Region: promoter
      • AT2G47844.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (CDS)
      • AT2G47850.3 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -269; Region: promoter
      • AT2G47850.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -302; Region: promoter
      • AT2G47850.2 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -302; Region: promoter
    Flanking Genome Sequence: 54-2256-1 - 5-prime edge 
    TTTGACCNNA NGNCAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATTCA CACACAGACA GTTTTCTCAC TTCACTTGCT 
    AACTCGGGGA GTAAAGTGGT CTGGTCCGAA AGTGGGGACA CATCCGTCAT 
    TTCTACCTGC TACTGTTTCT TAACTGCTCT CTCAACTCGC TCTGACCGAG 
    TCTGACTCGA CTCGACTCGC CTTCAATCAA TGCCATCACA TTTCTTCGTT 
    TCCGCTTCCC ATTTGTCGGC GCCACAAAAA CCTTCTGTTG TTCACGAAGC 
    CCTCTAGTAC CATATATAGG CCCATTTATA TAGCTAAGTC GGCCCAATTA 
    TGTTGTTAGT GTGCGCGGGC CAAATTTTAG ATTCGAAAAC GGCAGCGTTT 
    GAGCTGTTAC TTTTTTTTGC TCTTCTTGTC AACAAATCGA CACTGCCGAC 
    TAGACAGCGA AAATCCCAAA CAAAAAAATA AAAGAATGGC GTCTCTGTGC 
    CTTTCTCTCC ACCAAACCCT AACTAATCCC CTGTCGGCTC CCAGATGCAG 
    ACCACTCAGC CTCTCCTTCC CCGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19595377 [Map]; Strand: c
      • AT2G47840.1 - [+] show detail - Uncharacterised conserved protein ycf60
        Distance: -376; Region: promoter
      • AT2G47844.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (CDS)
      • AT2G47850.3 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -263; Region: promoter
      • AT2G47850.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -296; Region: promoter
      • AT2G47850.2 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -296; Region: promoter
    Flanking Genome Sequence: 54-2256-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ACATGTTGGC CACTCGCGCG CTATCCCCGC CCAAGGACCT TACCGTCATT 
    TTGGTTGGAA ACTAGTAAAA ATTAGTTTAT TTATTTTTTG TTTGTTGTTT 
    TGTCAAGTAG TATATTTCTT GGAAATATCT TCCCTTTTCT GGGATGCCTT 
    TTACNTTGGC GACCCAAGGA CCAAGAGAGA ACCAAAAATA AATCTCACAA 
    AACAAATTAA TACAAACTAC TACTATATAC TATTATTATT TAAAAAAGTA 
    TATGAGAAAA AGAAATTGAA AGCTAAAAAA AGAAACAGTA GTGCAGAGGG 
    CAGACCGTAC GGTATTCCTG AAGAGCGAAA GAAGAGAGAG AGAGAGAGAG 
    AGACCGACCA AANAAGAAGC TCCTCNCNGC TCNNTGGCNA NGCATCTCTG 
    ATNANNGNNC NACTATANAN ANNNNNNNAN AGANCTTNTA TAANAAGNCT 
    NCTCCGGTAA ATNTNNGNCN ANCCACCGAT GAGCTTNTGA CATTTACTCT 
    CTTATNANTN ANANCTNNTN NGGNGAGAGG AGNCGGTANA ANTGTGTNNA 
    TCCCNGGACA AGNNNTGNAC ATATACNGNT GANATGTNTN CTCNCNANNN 
    TGGGAGAGNG GGGGTNACAA TANGNTNNTN NTTNCGGGGN NNCCNNCTCC 
    NTANANNNNA NGNGGGGAGT NNNCGGNCNC CCCCTCCCCT NNGAGGNTAA 
    AAAANNTGNN CNGGNCTCNG GNGGGG

AT2G47840.1

Model type
Protein coding
Short Description
Uncharacterised conserved protein ycf60
Computational Description
Uncharacterised conserved protein ycf60; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55710.1); Has 358 Blast hits to 358 proteins in 92 species: Archae - 0; Bacteria - 125; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47844.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47850.1

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 1724 Blast hits to 1003 proteins in 159 species: Archae - 0; Bacteria - 7; Metazoa - 368; Fungi - 218; Plants - 971; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47850.2

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 1403 Blast hits to 803 proteins in 136 species: Archae - 0; Bacteria - 13; Metazoa - 242; Fungi - 122; Plants - 888; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47850.3

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 1724 Blast hits to 1003 proteins in 159 species: Archae - 0; Bacteria - 7; Metazoa - 368; Fungi - 218; Plants - 971; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Link
InterPro Scan - TAIR