Home
Mutant Lines
54-2264-1

54-2264-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 26499376 [Map]; Strand: w
- AT5G66320.2 - [+] show detail - GATA transcription factor 5
  Distance: -1699; Region: intergenic
- AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
  Distance: 1026; Region: intergenic

TGAAAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
CCATCCTACT TTCATCCCCA CCGTCGGCAA AGCTGCGTTT CTTGATATGG 
GGTCTTTATG TTTGTTGTAC TTTTTTTTTN TTTTAAANTT TGNAATGGCC 
AATTNANAAA AAAAANAANA AAAATTGNTA GAAAANCCTT NACCNAAANG 
GGGNAAAAAA NGNACNTAAA AGGCCCNCCA AAANTGGTAN CCCCTTTTGA 
ANNNTNCCNT NNCCNNTTTT TTNTNNGGNA NGGNNNNGNC CCCCCANGNN 
NTNAANTTGG TCNTTNAAAA TTGNNAAAAA ACCAAATTGG CCNNNANTTG 
GTAANGGAAA NNAAAAACNC NTGGTTGGGT TTNNNCCTTN ANANCTTAAA 
AGNCAAGGGA ANCACCTTTN NAANTCCAAA CCNTGGNNCN GGAAAANGNA 
AANNNTTCNA TTTTGGCNNN NNCCGGCCNG GGGANANNNT TNAAANNNTT 
NNANCNTTTT GNNTTANCAA TTTTTTTTTT NAAATTTNAA AAAAAANCCA 
ATTTTNTTTG GCTTTTTGGN NNNAAAANNN NNTTGGGGAA NNNAAACNTT 
TTNAAAANAN CTCCCNNAAG GGAAAACNAA AAATTTTCNG GTTGAAANCT 
TAAAGGGGGG GGGCNTNCCC CCAAAGGGGN GACCTTTGNA GAAACCCCAA 
TGAATGAATG AATGGGGGCC CCCTTTCCTT TNTGNAGGAA CCCCCCCTTT 
GGTTGGGCAT TTTCTNTTTG N

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 26499371 [Map]; Strand: w
  - AT5G66320.2 - [+] show detail - GATA transcription factor 5
    Distance: -1694; Region: intergenic
  - AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
    Distance: 1031; Region: intergenic
Flanking Genome Sequence: 54-2264-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCACGGA 
TACGTCGAGG CTAATTTTGT CATTTAATAT TTAGCATTGT TACAAAATAT 
TTATCTTCTC AGATTATCCA TTTCATTGAC AGAATTAGAG TGATTTATGA 
ATATACGTGT TTTAATTTAG GCAAGAGTGT GATGATTTTC CACCCTAAAT 
AATTGTGAAA ACAAAACAAC AATGGATTAG CCGTCGGGGA ATT
```

AT5G66320.2

Model type: Protein coding
Short Description: GATA transcription factor 5
Curator Summary: Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description: GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66330.1

Model type: Protein coding
Short Description: Leucine-rich repeat (LRR) family protein
Computational Description: Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR