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54-2370-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7305913 [Map]; Strand: w
      • AT5G22060.1 - [+] show detail - DNAJ homologue 2
        Distance: -116; Region: promoter
    Flanking Genome Sequence: 54-2370-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC CTAAAAATAT AGACGGAAAA AAAAAGACTA 
    AAAATATGGA ATTATGGAAA TTTTAATTTA AAAATTGTAA GAAAAGGAGA 
    TTACCTTTGA AATTTACATT AANAAGTTCA TATACTCATC TATTGTTGTT 
    TGACATATAA CATATTAAAG GTCTCTTCTT TTCAGTTAAC AAAATATTAA 
    GGTTTTTCTT TTATCAATCA GAATCCAAAT ATAATTAATA TACAATAATT 
    TTATCTCTTT TTAAATACAT ATAGTAATTT AAGACTTTAG AGTATTATAT 
    CAACATATAT AATCTAACTG CAAACAAAAA AATATTATAA ACAGGCATAT 
    AATCAAGTTA TTTCTGTTAT TTATTGATTA AAAATTAATT TTTCGATTTT 
    CTATGTAATA TTTATTAGTT ATTATTGATA AATTTTAAAC TTCAAAAATA 
    ATAATTAAAT AATATTGGTT TANAATAGTA GAAAATTATA AATCATCAAA 
    AATAATATAT TTATAATCAA CTTTTAATAT GTATATTTTT TTAGAAAATC 
    AATTGTCAAG GAATAGATGA AATATAATTT ATTGAATGCA ATTTAGTCCT 
    GACTGAAAAA TGTTATACCC GATCAACATA GAGGTTCCAG TTGACAAATT 
    TTGTCAAGTA CCTTCAAGTG ATCTAAATCA TTTTATAATG CCTGAGTATG 
    CAATATCTCA AAACAAANGA TTACNCAAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6300757 [Map]; Strand: c
      • AT4G10070.1 - [+] show detail - KH domain-containing protein
        Distance: -921; Region: promoter
      • AT4G10080.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-2370-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCTAT 
    ATTGGATGAT AGAGTTTAAT AGAATAGAAT TGAAGACATA AATTCTAGAT 
    TTTCAGGTAT AATAAAAGAA TTTCGAATCT TTCTTCTCAA TTCAAATAAA 
    TATTTTGCAG TATTTTAATA GAATT

AT4G10070.1

Model type
Protein coding
Short Description
KH domain-containing protein
Computational Description
KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT1G33680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G10080.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13530.1); Has 120 Blast hits to 114 proteins in 21 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 12; Plants - 100; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G22060.1

Model type
Protein coding
Short Description
DNAJ homologue 2
Curator Summary
Co-chaperonin similar to E. coli DnaJ
Computational Description
DNAJ homologue 2 (J2); FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to salt stress; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ homologue 3 (TAIR:AT3G44110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR