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54-2378-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2993174 [Map]; Strand: w
      • AT5G09650.1 - [+] show detail - pyrophosphorylase 6
        Distance: 0; Region: exon1 (5UTR)
      • AT5G09655.1 - [+] show detail - pre-tRNA
        Distance: -153; Region: promoter
    Flanking Genome Sequence: 54-2378-2 - 5-prime edge 
    GGGNAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTCT TTATTCTTTA TCACACCACC AAGAAAGACA 
    GAACACAAAA ACAAAAACAA AGATTTATTT TATGTTATAG ATCACGTGGG 
    GTTCTGTTGA GTAGGTATTA CCAACCTTTA GTAATAATAG ATAAATAGTT 
    CAAATTTGGA CTAGAGTGCA CAAAGGTTTC GTGGTGTAGT TGGTTATCAC 
    GTCAGTCTAA CACACTGAAG GTCTCCGGTT CGAACCCGGG CGAAGCCAAA 
    TTTATTTTTC GTTTTTTAAT TTGTGAAGAT GAACTCTGTT TTGGGTCCTA 
    AAGATTGGTT TTGGATAATC GAAAACAATA GAGAAGTACG TTGAAAAGGT 
    CACATATATC GTACACAAAC TGATAAGGAT TTATACAAAG TTGTATCAGA 
    AGCAGAGGAG ACATAGGCAT GATGTGATGA TGAGTACATG ATCATATAGT 
    TGAGGAAATA ACTTATTGTA TCTCTCTGAT TATCTCTCAG TTTCATTTTC 
    TGATGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2993166 [Map]; Strand: w
      • AT5G09650.1 - [+] show detail - pyrophosphorylase 6
        Distance: 0; Region: exon1 (5UTR)
      • AT5G09655.1 - [+] show detail - pre-tRNA
        Distance: -161; Region: promoter
    Flanking Genome Sequence: 54-2378-2 - 3-prime edge 
    TTTAANACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGAG 
    AGCCAGTCGA GGGTAAAACG AAAGGCCACC ATTTTCAATC TTTCCACAAT 
    AATGGCGGCT ACTAGAGTGT TAACTGCAGC GACGGCCGTG ACCCAAACCA 
    CCTCCTGTTT CCTCGCCAAG CAAGCT

AT5G09650.1

Model type
Protein coding
Short Description
pyrophosphorylase 6
Curator Summary
Encodes a protein with inorganic pyrophosphatase activity.
Computational Description
pyrophosphorylase 6 (PPa6); FUNCTIONS IN: inorganic diphosphatase activity, pyrophosphatase activity; INVOLVED IN: in 7 processes; LOCATED IN: thylakoid, chloroplast, chloroplast stroma, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: pyrophosphorylase 5 (TAIR:AT4G01480.1); Has 4681 Blast hits to 4677 proteins in 1304 species: Archae - 167; Bacteria - 3164; Metazoa - 258; Fungi - 287; Plants - 274; Viruses - 0; Other Eukaryotes - 531 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09655.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Val (anticodon: AAC)
Link
InterPro Scan - TAIR