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54-2400-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16368967 [Map]; Strand: w
      • AT5G40850.1 - [+] show detail - urophorphyrin methylase 1
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: 54-2400-1 - 5-prime edge 
    CCGGCGACAT CTCAGTCGCC ATCGAGTAAC GAAATAGATC GCAAGTCGAG 
    AAAGGAGGGG AAGAAGATCA AGTAGAATTA ATGGGCCAGA AAAGGACTTT 
    TGTGGCCCAA CTACACAAGA AAGGGAAATA GAGCCCAGAA CAAATGAGCC 
    TAAAAAGGGT AGAAGAAGAA GTACAAAACC TGCAACTTAG GTCGTAGGAT 
    TCGGTCAGGG GAAGAAGATA TTTCCATTAT GTCTGTAATG TCTTTAGATG 
    AACAAGGGAT TGGCAGGGCT ACTTTTGAGC TGATATTTGC ATTTGACGAG 
    GTCATATCTC TTGGACACAA GGAAAGTGTG ACAATTGTCC AGGTGAATCA 
    GTATTGTGAA ATGGAGAAGT TGCAGTAAGT GGTTGTGCAG AAGAAATGGT 
    TTTGATGGTT TGAGCAGATC ATTGTTTTGT AAATGGTTCT GCGGTGGGCA 
    TTAGTTAGGC CCCAAATTCT GTACCGTTCT CTTTTAACCC AAGAGAGTTA 
    GTTTATTGGA TTCTGTTTAC TGTTGGGTTC AATGAATAAA AAGAATTTTG 
    TTCTCTTTGG AGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16697669 [Map]; Strand: w
      • AT5G41750.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: intron4 (3UTR)
      • AT5G41750.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 54-2400-1 - 3-prime edge 
    ATTTAATCGG NNGAGGTATT TTANCGACCG TTACCGACCG TTTTCATCTC 
    GCCGGGATCT CCTCCAACCG GTGAAAGATG GGAATCACTT TATTAGAGAT 
    CGTTCTTTTG TGGCTGTCAT CAGCTTTGAT TACCTCCGCT GGTTCTCCTT 
    CCAACCTTCT AATACACATT CGTTTGCATT TAGGGACTTG AGCNGATGGG 
    GGAAGAGCCG GAATTGTCAC GAGTTTTGGG CAGCATTCGT TTAATGGTTT 
    TGATGTTTTC AATTTCAGAG AACTTGAAAC CTTCTGCTTC ATAGTCTCCA 
    TCTCCATCAG TGTGGTAATT GTTGTAGCCT ACAGTTTCGA AATAATCCAT 
    TTCGCTGTTT TTACTCTCTA TTTCAAAGTT GTCCACTTGG CTGCTGCTAC 
    TCTCACTTTC AAAGCTGTCC AATTCCCTCC TGCTGCTACC CTCAGCTTTC 
    TCTGTCATGA TCTGTACACC ACACCCAATA ATCTTGTCAC CGATTTCCGT 
    GTGGTTGAAC TCAAATGTAA TCTCGTTCAT AGTCACATCC ACTTCACAGA 
    ATT

AT5G40850.1

Model type
Protein coding
Short Description
urophorphyrin methylase 1
Curator Summary
Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.
Computational Description
urophorphyrin methylase 1 (UPM1); CONTAINS InterPro DOMAIN/s: Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Uroporphyrin-III C-methyltransferase, plant (InterPro:IPR012383), Uroporphyrin-III C-methyltransferase, C-terminal (InterPro:IPR006366), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776), Uroporphiryn-III C-methyltransferase, conserved site (InterPro:IPR003043); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G41750.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G41750.2

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR