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54-2404-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26453066 [Map]; Strand: c
      • AT5G66190.1 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66190.2 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-2404-1 - 5-prime edge
    CCAATCACAA CCTCATCATA TATCTCCCGC TAATCTTTTT TTCTTTGATC 
    TTTTTTTTTT GGCTAATAAT TTTTTGGACT TNGATCNCCN ATNAGTCAAT
    NTTNTTTTTT TTTTTNNGAN NANCCAGGGN NGNNGTTNNA AGGGCNGNAG
    NNTTTTNNCC TTCCNCNANG TANTCCTTTN TCCCNNCNAA AATNNCCTTN
    GTNNCCCCTN AANGGATTTN CCTAAAAANG GNNTNATTNC NNTTNCCNTT
    CCCNTTNNGT TAATNAGGTT TAAATAAANC NCNAATGGAA ANGCGGGATN
    TNGNCNNNCN NAATGGCTNT TNNTNTNGGN CCCCNGCNNN CANANCNNAG
    GGGGTNNNAA AAAANTNGGG NCAGGNANGG CNNAGGGNAN ANCNGNTCCT
    NCCGGGGCCC CCCCNGTNAA NGTNGNCAGG GGGTNTAAAA ANCNGGAAAA
    NGGANTNGNG GCNANNAAAT TNAANCCNAA AANCCCTNAC NCGGGNNGNN
    GCNTTTNNAN CNCCAAAANC NCNGGGNANN ACCCNCCCGG GNANACTGGG
    CNNNTNGNNT TNNCCNCCNA NGGGAAATCC NTTATTNAGG GGGCTTTGNA
    TGGTNTTTTT TAANGGCNTT TTNCNNGGNA NANATTGGAT AAGGNGGGTG
    GAGNACTAAG GGGAGGTNCC GTNTAGAAAA GGACAATCNN TGGGAGGG
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26453182 [Map]; Strand: c
      • AT5G66190.1 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66190.2 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-2404-1 - 3-prime edge
    GTGATTGGAT GTGTGTGGAT TGTGTGAAGG GCAATGTGAG GCCAAGTGTT 
    AGAGAGGATA AGTTATTTCT GCTTATCATT GTCCTAATTT AGCCTTTCAT
    GCGCCTGTTG TTCACATTTC AGTCCTACAT CAAAAAAAAA ACTGTTCACA
    CATCCATCTN ACAATCTGGT AGTTACNNGG GCTANCTAAT GGGCTCAANC
    NCTTATTGAT GGGCCTNTTA TNACATCTAT TTTGACATGG AGTCATCCCT
    CCCTCACTTG TTACCTTTCT TGTTGTCTTC AAAGTTTACA CACATACNTA
    NAGCTNTCAT CCCAAATTAC NCNAAATAGT TCAAAANAAN CTCAAATAAT
    CAATGATATC GTCTNTGCAN ATNTATNAAT CTGTNCANAA AANATCANCC
    ANANAAATTC AACTACAAAA AGCTCAAAAN CCTTTTTGTT TTTGATTTAC
    ACGGGTAAAG TNTTACACAA CAAGGTNTTN TGCGTTCGCT GGTCACNAAA
    TCAAAATCGA AATAATGAAT CAATTGAAAT TGTAACCCCT TGATCCTNTT
    TGCTGGTAAA GGTCCAGTCC TNTCTTTGCC TCCTGCAACA AAGCT

AT5G66190.1

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 1
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.
Computational Description
ferredoxin-NADP(+)-oxidoreductase 1 (FNR1); FUNCTIONS IN: oxidoreductase activity, electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, poly(U) RNA binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, photosynthetic electron transport chain, defense response to bacterium; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66190.2

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 1
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.
Computational Description
LEAF FNR 1 (ATLFNR1); FUNCTIONS IN: oxidoreductase activity, electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, poly(U) RNA binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, photosynthetic electron transport chain, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.3); Has 7407 Blast hits to 7407 proteins in 1806 species: Archae - 24; Bacteria - 3962; Metazoa - 817; Fungi - 811; Plants - 610; Viruses - 0; Other Eukaryotes - 1183 (source: NCBI BLink).
Link
InterPro Scan - TAIR