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Mutant Lines
54-2407-1

54-2407-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 13651 [Map]; Strand: c
- AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: -292; Region: promoter
- AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
  Distance: 0; Region: exon1 (CDS)
- AT4G00040.1 - [+] show detail - Chalcone and stilbene synthase family protein
  Distance: -976; Region: promoter

GTTCTCAGAC CTCGATCCTC CTCGGAGATC AGCTCAAGCA GCTTCCTCTT 
GGCTCGCTGT GCTGGATTCG CGAAGATCGA GCAGCTTGTT CGAAAACCGG 
CACGACGAGT GCNGGCGGAG TGGAGGAGAA CATGCCGACA GCGAGAGCGC 
GAGCGCCATG TTTGCAAATT GCAATTTCCA TGGTTAGGTT GTTGCACGAA 
GAAGAAGAAG AGATACTCTG TTATTTGGGT TTCTTTTCTA AAAAGCCCAT 
TTGGGTTTTA TTTGCTTTAT CTCATGAGTC TAAGCCCAAG CCCAAGGAAA 
TAGCTTGCAC GTGCGCGTCA CGTGTCTACG ATAAAACCCC AGCAACGGCG 
AGCGGCTTTG CCTTGCTCAT TCAACCTCGC TCGTCGTCGT CGTCGTCTCC 
ACTTCGATTT TTCAATCAGT AATATTGGTG GTTCAGAGAT GATGATGATG 
AATCTTTTAA GGAGATCAGC GATAGCCATC GGCCGCCAAT CAAAATCGAA 
ACTGGCGTCG TTTTCCTCCG CTACACAACC TTGTTCCGGA ATCCCAAAAT 
CGGTAAGGCT TTCGTATTCC ATCTCACTCT GCCGGCATTT CTATATAATA 
TTGGCTAAAA GCTATTGGTT CTTCTACTAC ATAGACACGG ATTGTTTAGG 
ATCTTGTGAA AATTGAGGTC GTTTTTTTCA GTGTCTCTAG TCCTGTT

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 13720 [Map]; Strand: c
  - AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: -361; Region: promoter
  - AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
    Distance: 0; Region: exon1 (CDS)
  - AT4G00040.1 - [+] show detail - Chalcone and stilbene synthase family protein
    Distance: -907; Region: promoter
Flanking Genome Sequence: 54-2407-1 - 3-prime edge
```
GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTG 
AGAACCCAGA AAGACCCCAA GAAGCGAGAT GAAATCGTGA ACGCCATCGA 
ATCCATGACG GTTATCGGGC GCAGCTCCAT CACCACAGAC GACTCTCTAT 
CTGCTACAGT GGCAGGCTCT TGTGGACGAC GGAGAAGGAA CAGTTGTTCA 
TCATAGAAAA GGCAGGCTTG TTTGGGACGA CCGCCGGAGA CGTTTTGCAG 
GTGATCGATG TGAATAAACG GATC
```

AT4G00026.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00030.1

Model type: Protein coding
Short Description: Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description: Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 184 Blast hits to 184 proteins in 36 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00040.1

Model type: Protein coding
Short Description: Chalcone and stilbene synthase family protein
Computational Description: Chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 5683 Blast hits to 5679 proteins in 1391 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 67; Plants - 3528; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link: InterPro Scan - TAIR