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54-2411-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23217562 [Map]; Strand: c
      • AT3G62760.1 - [+] show detail - Glutathione S-transferase family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-2411-1 - 5-prime edge 
    TGATAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATTACAC TTACTACTTC ATGAAGACGA GTCACGCCGG 
    TTTGATCAAC GACCGTCCTA ATGTTAAGGC AGTGGTGGGA AGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20727441 [Map]; Strand: w
      • AT3G55850.2 - [+] show detail - Amidohydrolase family
        Distance: -1548; Region: intergenic
      • AT3G55860.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 150; Region: intergenic
    Flanking Genome Sequence: 54-2411-1 - 3-prime edge 
    TTTACGCAGA TCAAACCATT TTAAAACAAG AGATAAGTTG GAAAGTAGAC 
    AGTTTTTGCA AAAATAATTT GAGAAATGGG TACTTTTTTT AGAAATAGGT 
    GGAATAAGTA CTTTTATCTC TCCTCTCTAA TAGAACTCTC CCACTAATAC 
    AGCTTTTAGT AAAATACAAT TTTACCTTTC TGTTGTTTTG ATGAAATAAA 
    CTGGGCCTCA TTAAAACCAG CCTAATAACA TCTCCAATTT TAAATTGCTC 
    ATGGACTTGA CATCTCCAAT ATATTATCAT TGTCATATAA AAGGATAAAC 
    CCTACAATCT CAGAAGCAAA TCTCAGATAC ATTGTCAAAT TCGTAACAAT 
    ATGGAAGGTA TGTTTATCAT AAAACTCTTT AAAGTTTCTG AATTTTTAAA 
    GGTGTACGTA AAGTATTTTG GTGTACATAC TGTATACCAA TCAGATTTTA 
    CATTTCTGAT ATCTATTAAG TGTACATACA CGTATGTAGT CTAGTCTACG 
    TATATGGTGT ACTAATGTTG GTATACGTAT GTGGTGTTTA AATGTTGGTG 
    TACGTATGTG GTGTACTTAT GTTAGTCTAG ACACTTGAGA TGTATTAACT 
    CTGGTGTACG TATGTTGNTT CCCTTATTCT AGTGTACGTA TGANGTGTAC 
    TAACGCATGT GTACTTGGGT GGGGTACTAT TGCTGGTTTA CGTATGNAGT 
    GNACATATTC TAGTTTTGAA CAT

AT3G55850.2

Model type
Protein coding
Short Description
Amidohydrolase family
Curator Summary
Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids.
Computational Description
LONG AFTER FAR-RED 3 (LAF3); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; INVOLVED IN: biological_process unknown; LOCATED IN: perinuclear region of cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 3 (InterPro:IPR013108), Metal-dependent hydrolase, composite domain (InterPro:IPR011059); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55860.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62760.1

Model type
Protein coding
Short Description
Glutathione S-transferase family protein
Curator Summary
Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).
Computational Description
ATGSTF13; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase 6 (TAIR:AT1G02930.2); Has 15143 Blast hits to 15132 proteins in 1449 species: Archae - 0; Bacteria - 8090; Metazoa - 2263; Fungi - 919; Plants - 1235; Viruses - 0; Other Eukaryotes - 2636 (source: NCBI BLink).
Link
InterPro Scan - TAIR