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54-2415-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 84668 [Map]; Strand: c
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: exon2 (CDS)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -733; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -748; Region: promoter
    Flanking Genome Sequence: 54-2415-2 - 5-prime edge 
    GAAAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATTCCCCG TANAGAGGAG CTCCCTGATG ACAAANAAAT 
    GACTATTTTC GACCATCTCN AGGAGCTCCG GGAGAGAATA TTCCGTCTCT 
    GTTTTGGCCT GTAGGAGCTG CANTCTTGGG ATGCTTTCGC CTTCTCCAAA 
    GATCTTATTG TCTTTCTTGA AGCTCCCGTC AAAACTCAGG GTGTACNGGT 
    TTCTCCAGCT TGCTCCTGGC GAATTTTTCT TCACAACTTT AAAGGTAATG 
    ATCAGATTGA CGACAGATAG CATCATATTC AAGATAGATG ATTTTCTTTT 
    TCTTGTGTTG CGGTGCAGGT CTCCGGTTAT TGCGGGCTTC TACTAGGGAG 
    CCCAGTGATC CTGTATGAGA TTATAGCTTT TGTCCTTCCC GGTCTGACAC 
    GGGCTGAGAG AAGGTTTCTG GGGCCAATTG TATTTGGCTC CTCATTGCTC 
    TTCTATGCTG GACTTGCTTT CTCCTACTGG GTTTTAACCC CTGCAGCCTT 
    GAATTTCTTT GTGAATTACG CTGAAGGTGT GGTAGAATCT CTGTGGTCTA 
    TCGACCAGTA CTTTGAGTTT GTACTAGTGC TTATGTTCAG CACAGGCCTT 
    TCTTTCCAGG TATGTGGCAA TATGATATTA TACATGTTCC TAAACGTTGC 
    TTTAGCCATC TTCACCTGGA ATTTTGGCTG CTTCTTGTTG GTTTCCAGGT 
    TCCAGTCATT CAGTTACTCC TGGGACAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 84675 [Map]; Strand: c
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: exon2 (CDS)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -726; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -741; Region: promoter
    Flanking Genome Sequence: 54-2415-2 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCGG 
    GGATACAGAA ACTCATAGAC CGAACTTGAT CTATCTTCAG ATGAATCTGC 
    CACAGCAGCA GTGTGTAATT CATCACTAAC TAACTAACTA ACTATATCAA 
    CAACCCAAAG CAGTGTGGAG ATGATAATAA AAATCAATCA AGAAAGTGGA 
    GTTTCTCCTA ATAATAAATA CCTGGTGGTC TGTCTTCTAC AGCAGAGCCA 
    ACGCCGGGGG TGGTCTCTGT TGGTGAATCG TCGTCATTGA GAGCTGACAC 
    CGGCCCAAAG CCTTTGCTCC GGCGTTGCGT GACGGAGTAT CGGAGTCCAG 
    CTTCCCTCCA CGAATTGCAG AAAGTTACAG CGTAAGGACA ACGCTGCTTT 
    GTAGGCGAAC CCAAGTTGCG AGTGGTGAGG CGGAAATGGT GGATAAGAGC 
    AGAACTAGTG CTTGTGCTGC TCATCTCTCG AAGAATCCTC TCTCGTATCG 
    TATGTTGTTG ATTTTCAATT GCAAAGAGAG CTTCANAGAA GGAACGATTG 
    GTTCCGGTCG AGTTTCGNTG CCCACATTTG ATATTTTCCA AAACAACCCA 
    ATCCTTTTTT TTTTNNNCNN NNNACNTNNT NCCNNNNNAN NNTTNNTNAN 
    AAANNGNNNN NGGGGNNNNT TNNNGNAAAN NNNNNGGNCT TTTNGGCCCT 
    TTTTNGNTTN NNNGGGCCNT TNNTNNG

AT2G01110.1

Model type
Protein coding
Short Description
Sec-independent periplasmic protein translocase
Curator Summary
mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description
ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.1

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.2

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link
InterPro Scan - TAIR