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Mutant Lines
54-2417-1

54-2417-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 22336333 [Map]; Strand: w
- AT5G55040.1 - [+] show detail - DNA-binding bromodomain-containing protein
  Distance: -4520; Region: intergenic
- AT5G55050.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
  Distance: -1368; Region: intergenic

TTTATAATGA CATTTTAGTT CATGAAGTGA CAAATCATTT CTTCTTCCTT 
TACTGATCTG ACAATTAAAA AGCCCGACTC ATCCAAGTTT TATAATCAAA 
TTCTAAACAT CCAGGTTTAT AATCTAATCA CCTAGAATCA TTCTAACCGA 
CCAAACTTAA CCGGTTGTTT TGTCTCACAT ATTTTAGTTT TATGTAATTA 
TTATCACTCG TTAGACGCGT TCCTCGTCGA TTCTGTTTGA CTCGTATCTC 
TCTATCATTC AATCAACACA CAATAATAAG TTGAATAAAA TATCCAAAAA 
AGGTATATAA TATAAATATA AAGATAATGG AAAGGAAGAG GATTGCATGG 
GCTAAAATAC ATACGATGGA AGTTTTAGTG GTGCACATCA CAACTTTAGT 
GCAAGAAAGA ACATCCAAAC AATATTATTT TTATTATACA GCTTGGAATG 
ATAAAAAATA ATAATCTAAA AGCTAAGTTT GACTTGTTTG CAAAATAAAA 
TAACTGAGAT GATTACATTT CGGATCAAAC CCCAATCTTC ACTTTTTAAA 
AAACTTGTCC AAAATCCAAT ATATGACTAC ATGGTGATAA TTCGCATGAT 
ATAATTACTA ATTATGCATG TTGGATAATG CAGTAAATTA CACTTTACCA 
GTTAAAATAG TTTATATTAT AAATTACTCT TTCGGTTTCC AATTACTAAA 
T

3 prime edge [+] show sequence

Chromosome: 5; Position: 22336217 [Map]; Strand: w
- AT5G55040.1 - [+] show detail - DNA-binding bromodomain-containing protein
  Distance: -4404; Region: intergenic
- AT5G55050.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
  Distance: -1484; Region: intergenic

ATTATAAACG CGTGTTTTCC CATTGTCTAA TTTGTATGAT GTGTTTTGCG 
TTGAGTTTTG AAAAATATTT TTGGAAAGTG ACGTAGTTAA TTCTTAAGTC 
AATTTATAAC TGATGTTAGA GTTGAAAAAG TGGAGGTTAA ATTCTATCCA 
TGATGAAATT GGGCCAACAT CACCATATAA TAATTAATAA GCTAAGAATT 
ACAAGTAGAT CAATGTACAA ACACATACAA TTAAGAAGTT GACCAAATGA 
TTAACTCTTA TACCATAAAC AAAAAAAAAC AGAAGTGCAA TATAAACAAG 
TTATTGCAAA TTGTAGGCCC ATAATTTTGG GGATTTATGT CTGTTACAAT 
GTGAAGCAAA CTTTTAGTTT AACTAGAATA TTGTAGAATT GAATGAAGTC 
TCTTTAATAG TTGTAGGTGG TCACTGTCAG TTTGTAACCG TGTCAACTAG 
GCTGATGATC CCCACTATGC ANAATT

AT5G55040.1

Model type: Protein coding
Short Description: DNA-binding bromodomain-containing protein
Computational Description: DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G55050.1

Model type: Protein coding
Short Description: GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description: GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G50400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR