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54-2445-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26385915 [Map]; Strand: c
      • AT5G65960.1 - [+] show detail - GTP binding
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-2445-1 - 5-prime edge 
    CACAACAATA TATCAAAACT GTTGATGTCA GTATGAGAAA CCCAGTCTTG 
    AAGAGCAACA AGGGTTGACA GCTGCAAAGA ATCGGGTAAA AAAGGGTTAT 
    GCAGGGATGG TAAGGTGAGA AGAATGAAGC GTGTATCATC ATCATCATCA 
    TCAATGTCAA ACCTCACTCA AGTCGAAGAC CATAACTAAC GCCACCAGTG 
    GATGTGAGTT AGGGAGATTG GGTAGAGAGT ATTCATCGCA AATATGTGAT 
    ATACATACAG AAACATCCGC AGTGTAATAC TTAGTGTTAA TCGTCCAGCT 
    GCCCACATTT TACAGAGAGA AAAAAGAGTT CAAACGATGA AACTTGTTAG 
    GGTAAGAAAT TCTTCAGTAC TAGACGTACC CATGAACTTC TGTTTGAGAT 
    GATGACTCCG ATGAATCCTC AAATTCCACA GAGAGCAATC CTGTGATTGA 
    TTACATATTA GAGCAAAACA AAATTTTGAA TCGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26385981 [Map]; Strand: c
      • AT5G65960.1 - [+] show detail - GTP binding
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-2445-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AACTTGTGCA TTGGTAACAA AGTAGATCGT GTCCCTCATC ACCTTGCTCA 
    TGATGAATAT AGACGGCGCC TTTTGAAGGC ATCAGACCCC TCTAGAGATC 
    TGTATTCGGA CATTGATGAC TTTGGGATCT CCGAAACTGA AGGAAGCAGC 
    NTTGTTGGGA AGTGAAGATG CATCACTAGA TATCAGGGGA GCATGTCTTG 
    AGTGGTGCTC TGAGAATAAC ATTGAGTTCA TTGAGGCTTG TGCCTCTAAT 
    CCTGATTTTG ACAAGTGTAA GTTCTATCTC CTTCCTTCTG ATTATATATT 
    GACTGCAATA TGCCCAATGT AATCTGGTTA CTCCTTGTAT AGCTTCTACT 
    GAACTTGTGA ATGAAAAGTG AGTGAAAATG GATGAGCAGA GAATACGCGT 
    ATTCGTCTCT CTAGCATTAA TGAGGCTCAC GGGTTGGTCC TTGTAGGTTT 
    ATCAGTCGAT GGGGATTCTC AAGGGGTTGA ACGTCTATTT GGTGCTCTTT 
    CGGCTCATAT GTGGCCTGGG ATGATTCTGA AATCTGGTGA TAGGATAAAT 
    GAACCTGTGT TACCTCAAGG GGAAGGTTAA TTGTTTCTTC CACTTTCCTC 
    TCCCATATAT GTATGAGTTC CTGAAATGTC CTTTCCCGGT TAGAGTTTCT 
    GTTCGACCAG GAAGTGGTAG ACCGAAACTC GACCCAGATA AGAAATCCTG 
    GTGAGGACAT TTCATTTCCA CT

AT5G65960.1

Model type
Protein coding
Short Description
GTP binding
Computational Description
GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial Rho-like (InterPro:IPR013684), Alpha/gamma-adaptin-binding protein p34 (InterPro:IPR019341); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR