Home
Mutant Lines
54-2448-1

54-2448-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 1594870 [Map]; Strand: w
- AT3G05500.1 - [+] show detail - Rubber elongation factor protein (REF)
  Distance: 0; Region: exon3 (3UTR)
- AT3G05510.2 - [+] show detail - Phospholipid/glycerol acyltransferase family protein
  Distance: -499; Region: promoter
- AT3G05510.1 - [+] show detail - Phospholipid/glycerol acyltransferase family protein
  Distance: -524; Region: promoter

TTGATATGGG TGTTTTGTTA GTGTGATTTT TTGTTTTGTT GGGATTAAGG 
TGAACCGGAT CTTGGTTAGC GATTGATCTC TGGTTCTCGT TCTTTTTTTT 
CTTTGTCATG AACTTTTGTT GTTTCGTTTA ATAATCAAAA GTTGTATAAT 
CTAAGTTTGG GATTACCACC CTATTGAGTA TTGAGTGATA AAAAAAAAGT 
TGCGTGAATT ATCGCCCTAT TGAGTGATAC ATCATAGTAT TACATATTTA 
TATCCTCANA AAATGGACCG AGAATTTTTA TCAAGAGATG AATATTGTTG 
TCGGTAGGAT TTAATTATCA GTTTGTATAT ATGCAGACAT ATGCAACTCG 
TATGTATTGT GATATGCANA TATTACTGAT ATCTATAACA AGTTTGTGAA 
CCTTTTTTAT TGACNAGGTA TGTCATCATG TTTGATAATC GTTAGCGTTA 
TTAACAGCGG TGAGAGAAGC ANACTTGANA TTTGCTTTTT CAANAAACTA 
TGGGCCCATG TCGCGCTGAT CCGAAACTTT AATCCCAATA GCTATTATGC 
ACACAAGTCA CCGCCGTTCA CGTTAGCACT CCAAACCCTT GGCACGTAAA 
CCTCCCGACA CTTGCTCTCT TTCTCTCATC TCCACGATCT TCTCACTCTC 
TTGGTGAGCT TTTTCTTTCC CGGTCAAAAT TTCNACTATA GAAGTTTCGT 
CCG

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 1594754 [Map]; Strand: w
  - AT3G05500.1 - [+] show detail - Rubber elongation factor protein (REF)
    Distance: 0; Region: exon3 (CDS)
  - AT3G05510.2 - [+] show detail - Phospholipid/glycerol acyltransferase family protein
    Distance: -615; Region: promoter
  - AT3G05510.1 - [+] show detail - Phospholipid/glycerol acyltransferase family protein
    Distance: -640; Region: promoter
Flanking Genome Sequence: 54-2448-1 - 3-prime edge
```
CATATCAATC AAGTGGATGG AACTCCAAAG GCTCGGTCTC AGCTTTCTCC 
TCAGCGAAGA TTTTTGAGAT CCTCTCTGTT GGAACCAATG GCATGTACGA 
TGTGACTCTG TACCCTTTCT CTGCAGCCTT AACCACAGTA TCATTGTACT 
TCTCAGAGCA GAAAGCAGCT GTTGGTACAG CAACTTGAGC CAGCCTTGGG 
AATAGAGGAA GCTGGTTAAG CT
```

AT3G05500.1

Model type: Protein coding
Short Description: Rubber elongation factor protein (REF)
Computational Description: Rubber elongation factor protein (REF); INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT2G47780.1); Has 129 Blast hits to 129 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G05510.1

Model type: Protein coding
Short Description: Phospholipid/glycerol acyltransferase family protein
Computational Description: Phospholipid/glycerol acyltransferase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Tafazzin (InterPro:IPR000872); BEST Arabidopsis thaliana protein match is: Phospholipid/glycerol acyltransferase family protein (TAIR:AT1G78690.1); Has 2893 Blast hits to 2889 proteins in 878 species: Archae - 0; Bacteria - 2016; Metazoa - 247; Fungi - 124; Plants - 99; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G05510.2

Model type: Protein coding
Short Description: Phospholipid/glycerol acyltransferase family protein
Computational Description: Phospholipid/glycerol acyltransferase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Tafazzin (InterPro:IPR000872); BEST Arabidopsis thaliana protein match is: Phospholipid/glycerol acyltransferase family protein (TAIR:AT1G78690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR