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54-2457-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17885383 [Map]; Strand: w
      • AT4G38090.4 - [+] show detail - Ribosomal protein S5 domain 2-like superfamily protein
        Distance: -562; Region: promoter
      • AT4G38090.1 - [+] show detail - Ribosomal protein S5 domain 2-like superfamily protein
        Distance: -657; Region: promoter
      • AT4G38090.2 - [+] show detail - Ribosomal protein S5 domain 2-like superfamily protein
        Distance: -657; Region: promoter
      • AT4G38090.3 - [+] show detail - Ribosomal protein S5 domain 2-like superfamily protein
        Distance: -657; Region: promoter
      • AT4G38092.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-2457-1 - 5-prime edge 
    NTTNAAGNAN NATANGNATC ATNGNCANGT NTATTCAGGN CGCGGNTTAC 
    CTCTTNCNNG NTACATATAC NGCCTAAACA AGTGGCTCGC TCTATTCCTG 
    GTTGATCGTT TTGGTTTCCT AATATACNTG GAGGAACATG TGTGTGTGTG 
    GTTGCATTTA TGAAATTGTT TTTTTTTATG TTTTCTTGTA ATTTGTTTGG 
    CTTGAAATTG AAGTCACCTG TAGAGTATTG AAAATTATCA AGTTTTCTTT 
    TTTATGGTGT TTGTTTATCT CCACGTCTCT GTTGACTAAG GTGTTAGAGA 
    CTACATGTCT CACTGAACTA GTTTACTATT ACCGTCTTTC TGAGTTTATA 
    TGAAGTACGA AGTCTCTTTG CTTATAAAAG GCTTGTCATG GTCTTTGTTT 
    GTGCTTACCT CATGTGTACT TGACATTTCC CTTTCTTTCG TACAGATTAA 
    TAGTAATCCA GTTGCTGCTG AGGCAACCAT TTTGTCGCTT CACCAATCCC 
    CACAGCCGTA TAAGGCGTGT AGATATATTC TTGGTAAGTC TTTCTGATGA 
    ATCCANAACC GGCCAAGTGG ACTTGGGAAG TTTCATCTGT TTGACTGAAA 
    GTGTTTTCTA CTTCCANAAA ATTCTCAGGT GGCAAATGCT AGGTTTCAAG 
    CTGCTGCAGC TATTCGAGAA CCAGCTATCA GGGAATGGAG CTTTCTTGCC 
    ACCG

AT4G38090.1

Model type
Protein coding
Short Description
Ribosomal protein S5 domain 2-like superfamily protein
Computational Description
Ribosomal protein S5 domain 2-like superfamily protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, Impact, N-terminal (InterPro:IPR001498), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38090.2

Model type
Protein coding
Short Description
Ribosomal protein S5 domain 2-like superfamily protein
Computational Description
Ribosomal protein S5 domain 2-like superfamily protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, Impact, N-terminal (InterPro:IPR001498), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 3816 Blast hits to 3816 proteins in 1926 species: Archae - 79; Bacteria - 3485; Metazoa - 43; Fungi - 32; Plants - 52; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38090.3

Model type
Protein coding
Short Description
Ribosomal protein S5 domain 2-like superfamily protein
Computational Description
Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, Impact, N-terminal (InterPro:IPR001498), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38090.4

Model type
Protein coding
Short Description
Ribosomal protein S5 domain 2-like superfamily protein
Computational Description
Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0029, Impact, N-terminal (InterPro:IPR001498), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568).
Link
InterPro Scan - TAIR

AT4G38092.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR