1. Home
  2. Mutant Lines
  3. 54-2461-1

54-2461-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26034390 [Map]; Strand: c
      • AT5G65160.1 - [+] show detail - tetratricopeptide repeat (TPR)-containing protein
        Distance: -501; Region: promoter
    Flanking Genome Sequence: 54-2461-1 - 5-prime edge 
    CTCTGGATAC TCATTGCAAT AAGAATCAAT GTTTAAAACT TTTAATACGT 
    GTCTCTCTCT ACTCCTTTTA TTGATATAAC TTTCTAGAAA AGATCATCAA 
    ACACGTTTTG TTACATAAAA AGGGAACTAC GGTGCTCTCC ATAAAATCAT 
    CTAAATATAG AGTCAATTGG AGAAAAACAC GGATTAATTT AAGGACAAAT 
    CGCCCACTTT CTTTCTAAAT ATTCATTCTT CTCTCTTACA CGACCGAGTC 
    AGCACGCAAC AACCATAATA ATTTTTAGAA AAATTAAAAT CAAATAACCA 
    AAAACAAGAA AAAGTAAGAG CTGACCAAGA GAACAGAGAA ATAGAGGTGA 
    TTAACTAACC AGGGNGTGCG GTGGGCNCCA ACTTTCAAAC TNACGANNNN 
    CNNNNNNNGA CATNNGANTA NCCCCCCNCN NNNNNCNTAN ACANANNNNN 
    NNCNNNCGNN NNNNNGNNNT TNCNNGGGGN NGNNGNNNCN CNNTTTTNNC 
    NNCCCCNACA GNNNGNGNGT TTTTTTTTTT NGGGGGNNNN CCCCNNNNNN 
    NNNGGGCNCC NCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26034508 [Map]; Strand: c
      • AT5G65160.1 - [+] show detail - tetratricopeptide repeat (TPR)-containing protein
        Distance: -619; Region: promoter
      • AT5G65165.1 - [+] show detail - succinate dehydrogenase 2-3
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 54-2461-1 - 3-prime edge 
    ATCCAGAGAG AGAGAGAGCT TTTACATAAT ATATATGACC GGTCCAAGTC 
    ATGTTGAAGC TAGACACTCT CTGTTCTCAC TAACGGATCG GAGAGCAAAT 
    GCTTAGACTT CATTTTCAAA ATGGCACTAG CTGGGTTAAG TCCTTTAGGA 
    CAAGTGGCCG TACAGTTCTT GATTGCTCTG CATCTATATA CTTTGGTTTC 
    ACTCTCAGTT ATTGCCTGTA GCCTCTCTTC TCTGTATTCA TCGCGGCTGC 
    GTCAAACCAA AATAAAAATG AACAGTGAAA ACCAAGTTTT TGAGAGACTG 
    GCTTTTAATC TTCACCTTTT TTTTACCTAT CGCTGATCCA ACGGTACGCT 
    TGTAGTAAAG CCGCAGGTCC TGGAAACTCC TCGGGGTTCC ACCAATAAGA 
    AGGACATGAT GTGGTACAAC ACGCGCACAA TATGCATTCG TATAGCCCGT 
    CTAGTTTCTT CCTGTCTTTT GGTGATTGCC GGTGTTCGCG TCCGTCTTTT 
    GGAGGCTTCC TCGTCTTTAA CCATGGCTCC ATTGATCTTT TATTCCAAAT 
    ACAGCACATC ACAATAGTTA GTTCCACATG AATATGATTC AAACACTTTG 
    TGATTTCACA AAGTTAAGCT ATGCTGCAAG TATTCACTTA AATCAAGTTT 
    TATGTTTCTT TTCCTCAATT TTGCATGAAA CCATCATATA TACTTGTTCG 
    ACATCCAT

AT5G65160.1

Model type
Protein coding
Short Description
tetratricopeptide repeat (TPR)-containing protein
Computational Description
tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G10090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65165.1

Model type
Protein coding
Short Description
succinate dehydrogenase 2-3
Curator Summary
One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Transcripts appear during seed maturation, persist through dessication, are abundant in dry seeds, and markedly decline during germination.
Computational Description
succinate dehydrogenase 2-3 (SDH2-3); CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Fumarate reductase, C-terminal (InterPro:IPR012285), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Alpha-helical ferredoxin (InterPro:IPR009051), Succinate dehydrogenase/fumarate reductase iron-sulphur protein (InterPro:IPR004489); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 2-2 (TAIR:AT5G40650.1); Has 8948 Blast hits to 8944 proteins in 2136 species: Archae - 163; Bacteria - 5307; Metazoa - 268; Fungi - 171; Plants - 148; Viruses - 0; Other Eukaryotes - 2891 (source: NCBI BLink).
Link
InterPro Scan - TAIR