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54-2476-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9764302 [Map]; Strand: c
      • AT2G22940.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING fing...
        Distance: -840; Region: promoter
      • AT2G22942.1 - [+] show detail - growth factors
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-2476-3 - 5-prime edge 
    TTATAAATTA ATAAAAATTC TTTTAATTGT ATGAAGGAGA TAGAGAAGAA 
    CTGTGAAACC GATGAGTGTT TGATGAAAAC GACATCGGAT GCTCACCTCG 
    ATTACATCTA TACCCAAAAT CCTCCTCCGC GTGCACCTAA TGTTAATCCC 
    TAATTGTATT CACTAGCACG AACCATCAAG TTACATGTTA TCATCTACTT 
    ATTCTTTTAT GTTCGAGTTT TACGTTTAAA CAATTTTGAA ATGATTCCAT 
    AAAACTCTTA CTAGTTTTAC AAATCTAAAT AAGTTAAATT TTATAGTAGT 
    CGAAGAATAT TGCATCTATG GAGAGTTTGG TTCTGGCTTT TCTAACAAAC 
    CAAACTAAAC TAAATGCTTG TGAAACATAA TGAAATGTTT GAAGGAAATG 
    AAGTAGAATT TAACAAATTT GTTTTGTTTG TTTGAAGGAG ATGGAGACGA 
    AGTGCGAAAC AGAAGAATGT TTGATGAAAA CGACGTCGGA TGCTCACCTT 
    GATTACATCT ACACCCAAAC ACATCCTCCA AAACCGCATG CATTTAAACG 
    TAATCCCTGA TTATATTCAA TCAGCATTCC ATATTTAATG TTGTGAAATC 
    CTTCTTTAGG AATGTTCTAA TTACCAATAA AGACTTAATT AATGAAATAT 
    ATATGATTAA TTAGTAGATT GNGGTTTTGA CCACACCATG TANGCTNTGT 
    AGCTTATNCT TTTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9783371 [Map]; Strand: c
      • AT2G22980.4 - [+] show detail - serine carboxypeptidase-like 13
        Distance: 120; Region: intergenic
      • AT2G22990.1 - [+] show detail - sinapoylglucose 1
        Distance: -2945; Region: intergenic
    Flanking Genome Sequence: 54-2476-3 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAGT 
    AACACCCACA ATTCTCTCGG ACATGTGAGA TCCAGCCCTA TCCGACCGTA 
    TATACGCCAT GTTCAGAAGG TTGTTAAGAC TTGTTTACCA ATTCTATAAA 
    TTATCGTATG ATATTTTTAT ATGTTTTCAC ACNGGTTTTG ACAATTATTT 
    TTTGGAAGAT CACCTATTCT GAAATTGCTG CAATCCAAAC ACGTTTAAAT 
    GTATAATTTG TTTCAAAATA GTTGACCAAA AAATAAATGT GATTTGGCGA 
    TATAAGTGAC AAAATCAATT CTTTTAAAAC GGGTAAATGT AATTTTGGTT 
    TTCTTATCGT TTTATTCAAA CAAAATTCAT TGTATAACTC GTGAGAAAGG 
    TATATGTAAG TTTATGTTGT ATGACGAGAA AAATCACACG ACGTCAATAT 
    GTGAATGCAA GATCTGCACG TTAAATTTTG TTATAAGATC TAGGGATATG 
    GTCTAGATTC TCATCGTATG AGCCTAATGA TTTTATGATT GAAGTAATCG 
    ACGATTTGGA TTTGTATTAA CGAACTGAAA AATGAGAGTA CAAAAGAGAT 
    CTCTTTAGAC ATGACAAATT TTTTTTGTTG AGTATTTTTC TGACTAAACA 
    TTACACCCAA AAAACATAAG TATTCTTTCT GGCTGTAACC ATACGTTTTT 
    CTTCATGTCT CCCCTTCTCC TTTTAAACGT ACTAGTTCGC AGTTCAAACA 
    CCTCCTCGAT CTTCGATTAC ATT

AT2G22940.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45560.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22942.1

Model type
Protein coding
Short Description
growth factors
Computational Description
growth factors; FUNCTIONS IN: growth factor activity; INVOLVED IN: cell proliferation; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); Has 21 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22980.4

Model type
Protein coding
Short Description
serine carboxypeptidase-like 13
Computational Description
serine carboxypeptidase-like 13 (SCPL13); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 11 (TAIR:AT2G22970.3); Has 4003 Blast hits to 3936 proteins in 468 species: Archae - 0; Bacteria - 512; Metazoa - 625; Fungi - 814; Plants - 1533; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22990.1

Model type
Protein coding
Short Description
sinapoylglucose 1
Curator Summary
sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose.
Computational Description
sinapoylglucose 1 (SNG1); FUNCTIONS IN: sinapoylglucose-malate O-sinapoyltransferase activity, serine-type carboxypeptidase activity; INVOLVED IN: phenylpropanoid metabolic process, proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 9 (TAIR:AT2G23010.1); Has 3959 Blast hits to 3880 proteins in 457 species: Archae - 0; Bacteria - 470; Metazoa - 646; Fungi - 843; Plants - 1550; Viruses - 0; Other Eukaryotes - 450 (source: NCBI BLink).
Link
InterPro Scan - TAIR