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54-2488-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3953922 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -3320; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 3260; Region: intergenic
    2. Chromosome: 4; Position: 3954990 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -4388; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 2192; Region: intergenic
    Flanking Genome Sequence: 54-2488-1 - 5-prime edge
    GNNTTCTACC CGANNTAAAA TCGGGTTACG ATAACGGNCG GTACGGGATT 
    TTCCCATCCT ACTTTNATCC CNNNCTNANC NGACGCCTAA NNCCANCTNG
    NAGCNCNGTC GANCANNCGN GNACCAGANC CTNTGATCNN ATGCTTTAGN
    TTNCNTAAGN NCNGGGGTAT AACCATTNTA GGCTGCTACA AACTGGTGAC
    CATTCCGACA NGGNAANCTN CCATCATNAN NGNAATGANN NTANGNAANN
    GNTAAANATT GNNGGTTATG GGATTGACTC GCTTGCANGC TTNGAGAAGC
    NAGAANANGG TAGGCTANAG TCTNNGGAGT CNAATATGAC TTGATGTCAT
    GTGTNTGNNT GANNATAAGA NCTTANAGCN CACCCCGATN TTATAAGCCT
    AAGTAGTTGT CNCCTTGNTN GAAAACACAA ANCCGNCGAC TCATATGGAC
    TTTGGCTNCN CCATGAANGC TNCCACCCCG GGCCGCNAGA NCACNCGTGC
    CCTATNTTTT TTNNNNTTTT ATNTCNNANN NTGNTTTNNN TNNTNTTCGT
    GATGTNNANN GTGCNCNCTN TCTCNCGCCT NNNCNNNNCG TTNCNNNAAA
    GCGTGNTCNC CNGCTNNCNT TNNNCCNNTC CGTCNAANGC GANTGTNNNN
    NNTNGTGCNN TTGCTNCANG CTTNAGNGNA GCGTAGNTGN NNGNTGNNNN
    NGNGNNTANN CGTNNCGCGC NGCGNGNANG TNNNNNNAGN GANNNNGGNT
    NCNANCANTT GANGTNCNAN TANGNTTNGC GANNNTNNNA NNAATNNATA
    NNAANAAN

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR