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Mutant Lines
54-2500-1

54-2500-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 3; Position: 23429599 [Map]; Strand: c
- AT3G63450.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -735; Region: promoter
- AT3G63450.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -735; Region: promoter
- AT3G63450.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -445; Region: promoter

TCTANATGTG NNNAGATGAT GAATACTATG GTGCNAGAAG GACTTTGANT 
ATTTGGACCC ATGATACGNA GTTTCGATTA TACACCANTN ANNANNTANN 
TANNATNTAN NAAAGGNNNA GANTACNNNN GACCGCCAGT ACACNGCGTA 
GANCACANTT GNATGATNTG AATACTNCNA ANNNAGGGCC ANTCGTACCA 
CGCAAGTNNA NANNTATTGA AAATCAGAAA CACACATTCT GTAATCTGGT 
TGAATACNTT GAATGCTGAA AAAAAAAGAA AAAGAATAAC ACATTATACT 
TCATAAGAGA TGATGATAAA ATATATACTA GAATCATATG GGTACAAAAA 
TACATGAGAG AGAGAGTGTG TGTGTGTGTT TTGTTGNGAA TTTGATTGCA 
AAAATCCAAA GTTTGACGCT TTGACCCACT CACTTGGGAG TNGGAGCCCA 
NAAGACACAA CAGTCACTCC ACTCTTCTTT AACTCTTTTT TTTTTNTTNA 
ATTTCCCCAC NCCNNNNNAN TNACNNGGGA AGGGGCAACT TTNNTTTTTG 
CANNCNGNGG NGGAAAAAAA AAAANTAAAA ANAAGCTACN ANCCGGGGCN 
GTNAACCACN CGNGNNCCNN NNA

3 prime edge [+] show sequence

Chromosome: 2; Position: 13944721 [Map]; Strand: c
- AT2G32870.1 - [+] show detail - TRAF-like family protein
  Distance: 0; Region: exon6 (3UTR)

CACNCNCATA GGATNTATCG GGGGNNTTAC NAACAANANA GGTAGTACTT 
ATAGACAAGC ATGCATTCTT GTCCATAAGA GANTGNGCNN CAACGGANTC 
TGTNGAACGN TATNGTAACA TTCAATACAN NTCAACCTGA NTCGGATCCG 
NCGNTCATTN TATTATTTTG NATAAACATG CATGTNTGNA TNATTCACTG 
ATATCTAAAC ACACATCACA ATATGGCNGA NTATATAACT GGTNGANAGG 
TTCAACATGA NCTATTCATT CTTCTGGTCT TGATCGANTC CNTTAATGCG 
CATCANAGAT ACTCNNTAGT GGATACAATT GAGATCTCAA CACCGATATA 
TATCTGATCG TTCACTAGAA ATCCCCTGNA AGATCTGTGG AGTTCCTCCA 
GCGGCAAAAA CTNGGGACGT CCCCATANGG AANCCATTTG ATTAACAGGG 
TTATAANGAA ACCNATATCT ACACTCTNTA TCAAACATGT AACTATTTAT 
CAGCNAAAGG CTTATATGTA TATGCATATA GAAAANGTAN AGCT

AT2G32870.1

Model type: Protein coding
Short Description: TRAF-like family protein
Computational Description: TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G32880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63450.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 366 Blast hits to 230 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63450.2

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63450.3

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G51950.2).
Link: InterPro Scan - TAIR