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Mutant Lines
54-2540-1

54-2540-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 18071102 [Map]; Strand: w
  - AT4G38670.3 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
    Distance: 0; Region: intron1 (CDS)
  - AT4G38670.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
    Distance: 0; Region: intron1 (CDS)
  - AT4G38670.2 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
    Distance: 0; Region: intron1 (CDS)
Flanking Genome Sequence: 54-2540-1 - 5-prime edge
```
TGTTCCGGCA ACGATTCGTG ATCTTGAACG AAATTGGCTC AACTGCTGCC 
ATGTGAAACC AATTCAATCA AAATCGTGTA AAGATTGTTA AACTCGATAG 
TCAAGCAATA AAGAAGCAAG GAATTAGACA GCGATTATTG ACCTGAAAGA 
GATGAGACAA AAGCCAGGAT CATAAACAAG AGGATC
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 18070986 [Map]; Strand: w
- AT4G38670.3 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
  Distance: 0; Region: exon2 (CDS)
- AT4G38670.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
  Distance: 0; Region: exon2 (CDS)
- AT4G38670.2 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
  Distance: 0; Region: exon2 (CDS)

CCGGAACACG ATATGGCCCG GTTTGCTCTC TGGTGCTAAC TCTGCGCCGC 
TCCCCACAAC TGGCTTTCGT CTCTCTAGAG GAAAATCTAA AACCGTCGCA 
ATACCAGAGT CGTGGTCCGG TCGTCTCTGG GCACGAACCT TGTGTTCACA 
AGATCGGAGT TCAGGTTCTT TCGTCTGCTT AACCGGAGAT TGCGGCTCGG 
GAAAAGTCGA ATGTTCAGGC TCCGGAGCTA AACCTCCAGC AACTCTCGCC 
GAGTTTACTC TCAATGGCAC AGGAGGACTA GATTTTTACG ACGTTAGCCT 
CGTCGACGGT TACAATCTCC CGATGCTAAT CTTGCCCAAG AAAATCGTCA 
TTGGAGGATG CGGAGCCACC GGGTGTCTCG TGGACTTGAA CGGCGCGTGT 
CCCAGAGACC TAAAGCTGGT GACGCGTGGG AATGGGAACG GTGTTGCTTG 
CCGTANCGCG TGCGANGCAT TCGGAGACCC AAGGTATTGC TGCAGCGATG 
CGTACGCCCA CGCCGGACAC GTGTCANCCC TTCGGTTTAC TCGCTTNTTC 
TTTAANCATG CGTGCCCACN AGCATACAGC TNCCNCCTTT GACGATNAGA 
CGAGCCCTTN CNCTTTGNNC CACCGGAGCC NATTACTTTA TNATNTTTTG 
GCCNCCNCCG NNTNCAAGGN GANATTTTGN CCGTTTTGCC CCTNTGNTNN 
CTTTGGAAAA TNCNNGGGNN G

AT4G38670.1

Model type: Protein coding
Short Description: Pathogenesis-related thaumatin superfamily protein
Computational Description: Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 1594 Blast hits to 1578 proteins in 180 species: Archae - 0; Bacteria - 39; Metazoa - 54; Fungi - 72; Plants - 1416; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38670.2

Model type: Protein coding
Short Description: Pathogenesis-related thaumatin superfamily protein
Computational Description: Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 1592 Blast hits to 1576 proteins in 180 species: Archae - 0; Bacteria - 39; Metazoa - 55; Fungi - 72; Plants - 1413; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38670.3

Model type: Protein coding
Short Description: Pathogenesis-related thaumatin superfamily protein
Computational Description: Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT4G36010.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR