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Mutant Lines
54-2543-1

54-2543-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 19548171 [Map]; Strand: w
  - AT2G47680.1 - [+] show detail - zinc finger (CCCH type) helicase family protein
    Distance: 0; Region: exon8 (CDS)
Flanking Genome Sequence: 54-2543-1 - 5-prime edge
```
CCCTAGGCGA TTTCCGCAAT GCTTGTATGC TTAACAGCAT CCTTAATGCA 
TCGTCAACGA CATCTGGGTC TGGTGGATC
```

3 prime edge [+] show sequence

Chromosome: 2; Position: 19548055 [Map]; Strand: w
- AT2G47680.1 - [+] show detail - zinc finger (CCCH type) helicase family protein
  Distance: 0; Region: exon8 (CDS)

GCCTAGGGGA CGTTACNAGC CCACATTTTA TGGACGGTTG CTTGCTAGCT 
TCCCATTGTC CTTTGATGCA TCTATTCTGG TCGTCAAGTT TGGTGAAATG 
GGAATGCTAA GACAAGGGAT TCTATTAGGT GTCCTGATGG ATACCCTACC 
ACTTCCTATC CATCATCCTT TTGGAGATGA TTCACTGGTA TGTCCTATTG 
GTGAATTTAT CTACAGTTCT ACACGTCTTT TTGATCATGA TGTTAATCAT 
CTACTTCACC TTTGTCTTCT TTTACAGTTT CTAGAGTATG TTGACCACTA 
TTTTGGTGGC AGCAAGACCA TTTCTGGTGG GCGGAGGGAG ATGGTACTCA 
TGGCAAACTT TTGTGCTTTT CAGTTTTGGC AACGTGTCTT TAAGGTAATA 
ATATAGTTTC GCCATATTCC CACGAAATAC CAGCTTNTNT TNTNGAAGAT 
C

AT2G47680.1

Model type: Protein coding
Short Description: zinc finger (CCCH type) helicase family protein
Computational Description: zinc finger (CCCH type) helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 9601 Blast hits to 8936 proteins in 1526 species: Archae - 0; Bacteria - 3317; Metazoa - 2456; Fungi - 1337; Plants - 806; Viruses - 205; Other Eukaryotes - 1480 (source: NCBI BLink).
Link: InterPro Scan - TAIR