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Mutant Lines
54-2613-2

54-2613-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 132313 [Map]; Strand: c
- AT1G01320.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: -1743; Region: intergenic
- AT1G01340.1 - [+] show detail - cyclic nucleotide gated channel 10
  Distance: 15; Region: intergenic

TCACACATGG AGGTATAGTT AGAGACTCGA TCTGCATAGA TTTGAATCAA 
ATAAAAATGG GTGGCTCACT GAAACGAAAA AGGAATATAA TGTTCTGGAG 
CTAAGAAAAA CTAGCTTGAT TGGGATTACA GAGAGAGGAA GAGAAGTGCC 
ATGCATGGAT CGAGGATCAA TGCATTGAGG AAAGTGGGAA AAGCGTATTT 
AGCTTTCAAG CTAATGCATA GCAAAACTGG GGTTGGTTAT GAGAGAATGG 
CTAGTGTTAG AAGGTCTGTC AGGTTTAGGA CTTTACTTAA ACTTGTTTTG 
ACTCCCGAGT TTAAAGAAAC TTTTTTGCGT TTATGTCTTT TCTTGAAGAA 
GGAAACAATC GAAAGTTTCC TTTTTATTTT GGAAGAACCT AATAATGAAA 
ACCTGAGGGA GAATGCTAAT CTCCAACAAC ATCTCACTCA TTCTCTCTTC 
TTCCTTGAGA AATCAAAGCA AACCAACCAA TGTTTCCTTT TGGTTTTGTT 
CGGTATAATA TCAACGTCTC TTTCGTATGT CGGTTTTCAG TGTTTCCTTT 
TTTTAAGTCC CGCTCCTGTA TAAAGCAGAC CAACATATTG AGCTTGCGTT 
TATATATACT ACAAGTAACC CTAGAGTACT TTCATCTCTT TTTTATCAAC 
AACCACCTGA NANAATGCTA ATCCCCAAAT TCATCTCTTC TTCCGTAAGA 
TTGATCGGAG TGGAAGAT

3 prime edge [+] show sequence

Chromosome: 1; Position: 132255 [Map]; Strand: c
- AT1G01320.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: -1685; Region: intergenic
- AT1G01340.1 - [+] show detail - cyclic nucleotide gated channel 10
  Distance: 73; Region: intergenic

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
GTGATGCTGA ACTGATGTAG CCAGAGTTAA GCGGCTCATA AGAGCCAGCC 
CATTATTTCA ATTTCTGTTA GTTGATAAAC AATTTTTTAC ATTTTATTGG 
TTCAAAGTTC AAACCATTGT TTTTACACTT TATTCCACAC ACTATACACA 
TAACACATGC AAGAGAGATC TAAGGGTCAG TTGTATGATT GGCGGTGAAG 
TCAGGCTCGG TGGGTTTTTG AGGTAGCAAA GGAAGAGTGT AGCGAGGAGG 
AAGGTTGGAG ATATTGTGCC TCAGATTGTG AAGCGCGTTT GATGCGAAAC 
GCGGACGCGT AAAGAGCGCC TCCAAGGCTC AAGGACGACG ACACGGTTGC 
AGCATTGTGT TCTTTATCTT GACTAGCGAG CGCTTCTCGG AGACGATCTT 
CTTCATCGCG TAGTGACTTG GCTAACTTCC TCCGACAGTA TCTCCTCCAC 
GCTGCTTGTA TAAAAGACAC GCTCCATGTT CTCCATTGCA CTGAGTAAAA 
CCTGTATATA TAATCAAGAT CCGGTTAAGC AGATCCAAAA CCGAAAACAG 
AGCCAAAGAA GCTGATGGGA GTGACCGAAC CGAAAAGTAT GTTGGAGTTG 
CTTGCTATGG AGGCGTCTGA ATTGTGAAGC GACAGACTTG AGATCCTCAG 
CTGTGAGAGC AAAGGCTTCG ACTTCAGTGA GAGCTTGACT G

AT1G01320.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1); Has 12123 Blast hits to 4846 proteins in 494 species: Archae - 106; Bacteria - 3214; Metazoa - 4973; Fungi - 1823; Plants - 555; Viruses - 79; Other Eukaryotes - 1373 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01340.1

Model type: Protein coding
Short Description: cyclic nucleotide gated channel 10
Curator Summary: member of Cyclic nucleotide gated channel family
Computational Description: cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1); Has 3364 Blast hits to 3209 proteins in 253 species: Archae - 0; Bacteria - 35; Metazoa - 1554; Fungi - 48; Plants - 1027; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).
Link: InterPro Scan - TAIR