1. Home
  2. Mutant Lines
  3. 54-2637-1

54-2637-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10329701 [Map]; Strand: c
      • AT5G28360.1 - [+] show detail - ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyc...
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 3; Position: 22765729 [Map]; Strand: c
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2637-1 - 5-prime edge 
    GNTTNTAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC CTATCTCAGG GTGCATGTGA GAATCAACTT 
    CTATCCAAAT TAGCTTTGAG TGACAAACAT GGAGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10329697 [Map]; Strand: c
      • AT5G28360.1 - [+] show detail - ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyc...
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 3; Position: 22765725 [Map]; Strand: c
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2637-1 - 3-prime edge 
    TNAAAACGGT AGNAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCTGACATTT ATCCGTTCCA GTAATTTGAA CAATGTGTGT GATTTTTGTG 
    AATTTGATGG ATTAGTTTAC TTGTGAGTTG TGATATGTAA ATGAATGGGA 
    GCATTCGAGG ATTATTTATA GTGGGATATT GAGAGCGAGC ATATGAAAGA 
    AACTTGTTTC CGTTATGAGG AAACTTAACT GAAATTTTCT GTTTTCTATA 
    AAACTAGTAG TATTAATTTT GCGTGAAGTC AAACCTACGG CCAAAGCCCA 
    AAATGTTNGT AGTCTTTTTT TTNNTTNNTN TNTNCCANTN NTANCNTTTT 
    TTTTTNCCAC CGNACCNGTT TTTNGNCCAA AAAAANGNNT NNTAANNTTT 
    NNNNNNTTNN TTTATNNACN AATGNACCAA CCTTTNATTT NNNGAACCNA 
    AAANTNNTNN TTTGGTTTTA AAATTAATTA NAATTTATGG TNNNNAACCA 
    CCNGNAANTT TTTTNAANCC CCCNNNTCCC TNCCAANGGG NCCTTTGAAA 
    ATTTAAAAAC CTTTTTTTCC TNGAAAAACC TTGGTANANC AAANNTTCCT 
    TGGGGTNAAA AATCCCNCCG GAACTGGGTT TNCCGGNATT ACCNANGNCC 
    TATTTCCTTT AAAAAACCTT GGGGNTCATT NATTTTANGT AAACCATTTA 
    ATCCANCCAA AAGGTTTTCC GACCAAAACC AATTTAAAGG NCNNAAGGGG 
    TTTTAAAATT CCNCCGGGNN NCCAANT

AT3G61510.1

Model type
Protein coding
Short Description
ACC synthase 1
Curator Summary
Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.
Computational Description
ACC synthase 1 (ACS1); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 2 (TAIR:AT1G01480.1); Has 22999 Blast hits to 22998 proteins in 2818 species: Archae - 808; Bacteria - 15898; Metazoa - 560; Fungi - 631; Plants - 1241; Viruses - 0; Other Eukaryotes - 3861 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28360.1

Model type
Pseudogene
Short Description
ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyclopropane-1-carboxylate synthase/ catalytic/ pyridoxal phosphate binding / transferase, transferring nitrogenous groups
Curator Summary
a pseudogene belonging to the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Transcript has not been detected.
Computational Description
1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE (ACS3); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity; INVOLVED IN: biosynthetic process; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 826 Blast hits to 826 proteins in 226 species: Archae - 2; Bacteria - 146; Metazoa - 60; Fungi - 54; Plants - 536; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR