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54-2642-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13723753 [Map]; Strand: c
      • AT4G27435.1 - [+] show detail - Protein of unknown function (DUF1218)
        Distance: -41; Region: promoter
    Flanking Genome Sequence: 54-2642-1 - 5-prime edge 
    GTCTCGCCTA ATGAAAAAGA CACGTTACCA TTTCTTTGAA ATGGGTATTT 
    CACCTTTATT TATTTATTCG TAGTGTTTAA TAAAAGGTAC TTTTGCATCA 
    TGGAAAAGTT TATTTAATAA ATTGGGGAAT ATTGTAGTCG CGGATGCTTA 
    ATGAGAAAGA TAGTACCAGA GCTTCCTTGT GGTAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13725501 [Map]; Strand: w
      • AT4G27440.1 - [+] show detail - protochlorophyllide oxidoreductase B
        Distance: -45; Region: promoter
      • AT4G27440.2 - [+] show detail - protochlorophyllide oxidoreductase B
        Distance: -45; Region: promoter
    Flanking Genome Sequence: 54-2642-1 - 3-prime edge 
    TTAAAACGGT AGCAGGTATT TTACCGACCG TTACCGACCG TTTTCATAAA 
    GATGTGTGGA TAGCATTATC TTGAACTAAG TATCTGCCAC GTCGTCGTTT 
    AATATCCAAT GAGAATTTGA GAATTAGATT TCCTTCTCCT TAGATATTTT 
    ATTTTAATGT CTTTAAACTA TTTTTTTGGG TTAACAAATG GAACAGTTGC 
    AATAAAGGGA TGGTGATTGC TGATTGGTGT TGATGGGATT CCATACCCTT 
    TGGCATGGGA GAAGGAGATA GATAGAGCTA GTTGCTTGCT ACTAGTTGTT 
    ATGGACGTTC TCATGTTTGG ATAAGTTTCT CCAGTAATAA ACAATTGTTA 
    CTCTGTCAAA AGTATGCATT ATACGAATTT GAATTTACGC ATTCACGAGA 
    ATAGCTCAAA CCTTATTCAA TGAATAAGAG CATTATGTCA TATGTCACAA 
    AATCGTCAAA TTACATCCAC TCTTTTTAAA ACAACATTTC AACTCGATCT 
    AATAACCATA CAAATAAATC TACAAATCTC ATATGTGTAC CATCACTTTC 
    AAATAATTTT GTCATAGTTG TAACATTTCA TCATAGTTGT ACATAGAAAA 
    CCCACCTCAA AATATGATAT TAGCATATCA AATAGCACAT TTAGAGAGAA 
    AAAAAATAAA ACTTATTTGT TGGTTAAGAA CCTCTAGTAA GGTGAAAGAG 
    AGGCCTCAGC AGCAGAGAAA TAGAAGAAAT AGTNGAACTG AGAGACAATG 
    GGCGTTGAAG AAGACGAATG AG

AT4G27435.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1218)
Computational Description
Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT3G15480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27440.1

Model type
Protein coding
Short Description
protochlorophyllide oxidoreductase B
Curator Summary
light-dependent NADPH:protochlorophyllide oxidoreductase B
Computational Description
protochlorophyllide oxidoreductase B (PORB); FUNCTIONS IN: oxidoreductase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process, response to ethylene stimulus; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1); Has 19396 Blast hits to 19385 proteins in 2086 species: Archae - 175; Bacteria - 10514; Metazoa - 1820; Fungi - 1776; Plants - 1038; Viruses - 0; Other Eukaryotes - 4073 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27440.2

Model type
Protein coding
Short Description
protochlorophyllide oxidoreductase B
Curator Summary
light-dependent NADPH:protochlorophyllide oxidoreductase B
Computational Description
protochlorophyllide oxidoreductase B (PORB); FUNCTIONS IN: oxidoreductase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process, response to ethylene stimulus; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Light-dependent protochlorophyllide reductase (InterPro:IPR005979), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR