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54-2657-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9793420 [Map]; Strand: w
      • AT4G17585.1 - [+] show detail - Aluminium activated malate transporter family protein
        Distance: -161; Region: promoter
    Flanking Genome Sequence: 54-2657-1 - 5-prime edge 
    CGNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCTG TACCGNNATC ACCANCNNGG GCCGNGAACA 
    CACGCAGTNC CACTATAGGN ATGGCGTNCG AATANCTNCT ACAGAGNNAT 
    NGGAAAGTAG GAATGGGACC TANNNAAAGG TCTGACCAAT GAGGGCNGAA 
    AANGNCGAGT GNTATAGATG TTAATAATAA ATTAAAGAGT ACTTTTTNCA 
    CTAANATACG TTCCATAATG CTATTAGTAT GAAAATTAGA GATCCAATTA 
    TTATCCTTAG ATATAACCAT TTGTATATTT ATATGCATGT GTCACCCAAT 
    TAGTACTAAT GTTGTTAAAC ATGTAGTTCC AAGAACTAGA TCACCAGNCC 
    GGGCCGTNGA CCACNCGTGC CCTNNNGGGN GNNNNNNNNN AGGGGGGGGG 
    GGGTNNNNNG G

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23058819 [Map]; Strand: w
      • AT1G62360.1 - [+] show detail - KNOX/ELK homeobox transcription factor
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-2657-1 - 3-prime edge 
    TCCTCACCAT TACTTCATGG ATNATGTCTT GGGCAATCCT TTCCCAATGG 
    ATCACATCTC CTCCACCATG CTTTGATCGA TCCTTTAAAA CGTNATCTTN 
    ATTATATTTA TAATCATTAA ACAGCTTATA ATATGTATAA TCTATGGTTC 
    TCGGTATACT TAGGAACATA TGAAACATGT NCCAATTGAT GAACAAGCGT 
    GTGATGTGTG CGGTGTGTAT CATTNNGNGT TGGNCTATTG TTATGTGAAA 
    TTCCTATNCC TATTATAATG ATAGTAAAGC T

AT1G62360.1

Model type
Protein coding
Short Description
KNOX/ELK homeobox transcription factor
Curator Summary
Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.
Computational Description
SHOOT MERISTEMLESS (STM); CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED-like from Arabidopsis thaliana (TAIR:AT4G08150.1); Has 6066 Blast hits to 6064 proteins in 384 species: Archae - 0; Bacteria - 0; Metazoa - 1706; Fungi - 298; Plants - 3900; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G17585.1

Model type
Protein coding
Short Description
Aluminium activated malate transporter family protein
Computational Description
Aluminium activated malate transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to aluminum ion; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: aluminum-activated, malate transporter 12 (TAIR:AT4G17970.1); Has 281 Blast hits to 280 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR