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54-2696-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19619649 [Map]; Strand: w
      • AT1G52680.1 - [+] show detail - late embryogenesis abundant protein-related / LEA protein-related
        Distance: -628; Region: promoter
      • AT1G52690.1 - [+] show detail - Late embryogenesis abundant protein (LEA) family protein
        Distance: -96; Region: promoter
      • AT1G52690.2 - [+] show detail - Late embryogenesis abundant protein (LEA) family protein
        Distance: -96; Region: promoter
    Flanking Genome Sequence: 54-2696-1 - 5-prime edge 
    GAGAAACCTA ACTTTAACAC TCGCACATAA CTCCAAGTTT CGAAACTTCG 
    TCACATCAAC CTAATCGGGG CACAGTACCT ACACACCTGT CGCGAAACTG 
    CAACACCTAT CTTGTTCTCT CGCCGACCAA GACTTGCTAT AAATAACTCT 
    GACTAACGAG TCGGAGACAA CTCACAGTTC CAAACACACA AAAAACACAA 
    GATCTAAAAA AAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19619575 [Map]; Strand: w
      • AT1G52680.1 - [+] show detail - late embryogenesis abundant protein-related / LEA protein-related
        Distance: -554; Region: promoter
      • AT1G52690.1 - [+] show detail - Late embryogenesis abundant protein (LEA) family protein
        Distance: -170; Region: promoter
      • AT1G52690.2 - [+] show detail - Late embryogenesis abundant protein (LEA) family protein
        Distance: -170; Region: promoter
    Flanking Genome Sequence: 54-2696-1 - 3-prime edge 
    TGAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCTCTC 
    GTTTTCATGA TGACCTATAT CTATGTGACA CGTCATGGTA AAAACGGAGC 
    TACGGAAGAT GTTAGACACG TGGTGACTCA CGTTATCTTG ATATTGGATA 
    TTCATCTACT CAAGGCATAT ATTATGCAAC CGCCATTACT GCATAGATAT 
    TTACTTTTTT CTAAAAAGAA CCAATACACA ATTCTTACAT GGATTCGAAG 
    TAATTTTAAT ATAGCTATAA ATTCTTGAAA ATCGATCGGA TGAGTTTTTA 
    TTGTATTCCT TATTGATATA GTAATGATAA ATATATTTTT TGACAACAAT 
    AAAAATCATA AATAATTGTC ACCGGAAAAA AAGGTTAAGA TCTTCCTATT 
    GCCGGTCATC CTACTTCACT TCTTAACCAA GCAACGTTAG GGTAATAAGT 
    CCTCAAACTA TTCACCTCCA CAGAAAAATT TAGCCATGTC AATCGTCAAT 
    GGTATGTTAT TTTCCACGTG TTAGTGTATG CTTANATTTA NGATTTTACT 
    AAATATACAC TTTCTATTAT ATAAATACCA TTATAATGCA TATCAAATCC 
    CTTCAATNTT CTACAAGCTC CANCCCNGGC CGNNCCCCNG NNNCCNTTNN 
    A

AT1G52680.1

Model type
Protein coding
Short Description
late embryogenesis abundant protein-related / LEA protein-related
Computational Description
late embryogenesis abundant protein-related / LEA protein-related; Has 75 Blast hits to 75 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G52690.1

Model type
Protein coding
Short Description
Late embryogenesis abundant protein (LEA) family protein
Computational Description
Late embryogenesis abundant protein (LEA) family protein; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT3G15670.1); Has 2929 Blast hits to 1441 proteins in 420 species: Archae - 10; Bacteria - 766; Metazoa - 298; Fungi - 136; Plants - 1347; Viruses - 16; Other Eukaryotes - 356 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G52690.2

Model type
Protein coding
Short Description
Late embryogenesis abundant protein (LEA) family protein
Computational Description
Late embryogenesis abundant protein (LEA) family protein; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT3G15670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR