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54-2705-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9499935 [Map]; Strand: c
      • AT4G16880.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: -2622; Region: intergenic
      • AT4G16890.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
        Distance: 571; Region: intergenic
    Flanking Genome Sequence: 54-2705-1 - 3-prime edge 
    ATTAGCTGGA TGATACTTCA TGGTTTGGAA GTGGACCAGA CAATGTCTAC 
    TGCAGGAAGT TAATAAGCTC TTTCCTTCAC CCGAAGGGTT GTTCCAGCTT 
    TGGCCGAAGT TAAGCCAAAA ACGCTTCCGC CCTTTGGCTA TTGAATCAGC 
    GGATATGCAA ATGTTGCTGA TGACGAGTGA CTTGCTATGT AAAATATTTC 
    CAACACATTC TTGTTGTTTT CTGTACCCAA AGTCTGATTT ATTCATTGCT 
    AATAAAGAGA AAAACAACCT TTACTAACAT AAACATTGAG ATCTATGTTT 
    TAAAAATGGC AAGACTATTT TGGTACAATA CAAAACCATG CCAAAGATGT 
    AAACCCCGTA GGTACGCTCA CAAATTCAAT GTCTTTTCAA TTAAAAATAG 
    ATAGATGTAT CATGTATGGT ACAATACAAA ACCATGCCAA AGATGTTTTT 
    CCAGAATATG CTAAAGTGTG GCTTTTTGAA ACATTTATTC TTTCAGGAAA 
    AGCGAAATGT TCAAAACAAA CGCAGAGTTG GAGAATT

AT4G16880.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16890.1

Model type
Protein coding
Short Description
disease resistance protein (TIR-NBS-LRR class), putative
Curator Summary
Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.
Computational Description
SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 42615 Blast hits to 22768 proteins in 878 species: Archae - 40; Bacteria - 3631; Metazoa - 4485; Fungi - 289; Plants - 31985; Viruses - 14; Other Eukaryotes - 2171 (source: NCBI BLink).
Link
InterPro Scan - TAIR